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comparison qiime2/qiime_feature-table_merge-taxa.xml @ 0:370e0b6e9826 draft

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author florianbegusch
date Wed, 17 Jul 2019 03:05:17 -0400
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1 <?xml version="1.0" ?>
2 <tool id="qiime_feature-table_merge-taxa" name="qiime feature-table merge-taxa" version="2019.4">
3 <description> - Combine collections of feature taxonomies</description>
4 <requirements>
5 <requirement type="package" version="2019.4">qiime2</requirement>
6 </requirements>
7 <command><![CDATA[
8 qiime feature-table merge-taxa
9
10 #def list_dict_to_string(list_dict):
11 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
12 #for d in list_dict[1:]:
13 #set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name')
14 #end for
15 #return $file_list
16 #end def
17 --i-data=$list_dict_to_string($input_files_idata)
18
19
20 --o-merged-data=omergeddata
21 ;
22 cp omergeddata.qza $omergeddata
23 ]]></command>
24 <inputs>
25 <repeat name="input_files_idata" optional="False" title="--i-data">
26 <param format="qza,no_unzip.zip" label="--i-data: PATH List[FeatureData[Taxonomy]] The collection of feature taxonomies to be merged. [required]" name="additional_input" type="data"/>
27 </repeat>
28 </inputs>
29 <outputs>
30 <data format="qza" label="${tool.name} on ${on_string}: mergeddata.qza" name="omergeddata"/>
31 </outputs>
32 <help><![CDATA[
33 Combine collections of feature taxonomies
34 #########################################
35
36 Combines a pair of feature data objects which may or may not contain data
37 for the same features. If different feature data is present for the same
38 feature id in the inputs, the data from the first will be propagated to the
39 result.
40
41 Parameters
42 ----------
43 data : List[FeatureData[Taxonomy]]
44 The collection of feature taxonomies to be merged.
45
46 Returns
47 -------
48 merged_data : FeatureData[Taxonomy]
49 The resulting collection of feature taxonomies containing all feature
50 taxonomies provided.
51 ]]></help>
52 <macros>
53 <import>qiime_citation.xml</import>
54 </macros>
55 <expand macro="qiime_citation"/>
56 </tool>