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comparison qiime2/qiime_feature-table_presence-absence.xml @ 0:370e0b6e9826 draft

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author florianbegusch
date Wed, 17 Jul 2019 03:05:17 -0400
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1 <?xml version="1.0" ?>
2 <tool id="qiime_feature-table_presence-absence" name="qiime feature-table presence-absence" version="2019.4">
3 <description> - Convert to presence/absence</description>
4 <requirements>
5 <requirement type="package" version="2019.4">qiime2</requirement>
6 </requirements>
7 <command><![CDATA[
8 qiime feature-table presence-absence
9
10 --i-table=$itable
11
12 --o-presence-absence-table=opresenceabsencetable
13 ;
14 cp opresenceabsencetable.qza $opresenceabsencetable
15 ]]></command>
16 <inputs>
17 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table to be converted into presence/absence abundances. [required]" name="itable" optional="False" type="data"/>
18 </inputs>
19 <outputs>
20 <data format="qza" label="${tool.name} on ${on_string}: presenceabsencetable.qza" name="opresenceabsencetable"/>
21 </outputs>
22 <help><![CDATA[
23 Convert to presence/absence
24 ###########################
25
26 Convert frequencies to binary values indicating presence or absence of a
27 feature in a sample.
28
29 Parameters
30 ----------
31 table : FeatureTable[Frequency | RelativeFrequency]
32 The feature table to be converted into presence/absence abundances.
33
34 Returns
35 -------
36 presence_absence_table : FeatureTable[PresenceAbsence]
37 The resulting presence/absence feature table.
38 ]]></help>
39 <macros>
40 <import>qiime_citation.xml</import>
41 </macros>
42 <expand macro="qiime_citation"/>
43 </tool>