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comparison qiime2/qiime_feature-table_relative-frequency.xml @ 0:370e0b6e9826 draft

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author florianbegusch
date Wed, 17 Jul 2019 03:05:17 -0400
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-1:000000000000 0:370e0b6e9826
1 <?xml version="1.0" ?>
2 <tool id="qiime_feature-table_relative-frequency" name="qiime feature-table relative-frequency" version="2019.4">
3 <description> - Convert to relative frequencies</description>
4 <requirements>
5 <requirement type="package" version="2019.4">qiime2</requirement>
6 </requirements>
7 <command><![CDATA[
8 qiime feature-table relative-frequency
9
10 --i-table=$itable
11
12 --o-relative-frequency-table=orelativefrequencytable
13 ;
14 cp orelativefrequencytable.qza $orelativefrequencytable
15 ]]></command>
16 <inputs>
17 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to be converted into relative frequencies. [required]" name="itable" optional="False" type="data"/>
18 </inputs>
19 <outputs>
20 <data format="qza" label="${tool.name} on ${on_string}: relativefrequencytable.qza" name="orelativefrequencytable"/>
21 </outputs>
22 <help><![CDATA[
23 Convert to relative frequencies
24 ###############################
25
26 Convert frequencies to relative frequencies by dividing each frequency in a
27 sample by the sum of frequencies in that sample.
28
29 Parameters
30 ----------
31 table : FeatureTable[Frequency]
32 The feature table to be converted into relative frequencies.
33
34 Returns
35 -------
36 relative_frequency_table : FeatureTable[RelativeFrequency]
37 The resulting relative frequency feature table.
38 ]]></help>
39 <macros>
40 <import>qiime_citation.xml</import>
41 </macros>
42 <expand macro="qiime_citation"/>
43 </tool>