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comparison qiime2/qiime_diversity_pcoa-biplot.xml @ 29:3ba9833030c1 draft

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author florianbegusch
date Fri, 04 Sep 2020 13:12:49 +0000
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28:c28331a63dfd 29:3ba9833030c1
1 <?xml version="1.0" ?>
2 <tool id="qiime_diversity_pcoa-biplot" name="qiime diversity pcoa-biplot"
3 version="2020.8">
4 <description>Principal Coordinate Analysis Biplot</description>
5 <requirements>
6 <requirement type="package" version="2020.8">qiime2</requirement>
7 </requirements>
8 <command><![CDATA[
9 qiime diversity pcoa-biplot
10
11 --i-pcoa=$ipcoa
12
13 --i-features=$ifeatures
14
15 --o-biplot=obiplot
16
17 #if str($examples) != 'None':
18 --examples=$examples
19 #end if
20
21 ;
22 cp obiplot.qza $obiplot
23
24 ]]></command>
25 <inputs>
26 <param format="qza,no_unzip.zip" label="--i-pcoa: ARTIFACT The PCoA where the features will be projected onto. PCoAResults [required]" name="ipcoa" optional="False" type="data" />
27 <param format="qza,no_unzip.zip" label="--i-features: ARTIFACT FeatureTable[RelativeFrequency] Variables to project onto the PCoA matrix [required]" name="ifeatures" optional="False" type="data" />
28 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
29
30 </inputs>
31
32 <outputs>
33 <data format="qza" label="${tool.name} on ${on_string}: biplot.qza" name="obiplot" />
34
35 </outputs>
36
37 <help><![CDATA[
38 Principal Coordinate Analysis Biplot
39 ###############################################################
40
41 Project features into a principal coordinates matrix. The features used
42 should be the features used to compute the distance matrix. It is
43 recommended that these variables be normalized in cases of dimensionally
44 heterogeneous physical variables.
45
46 Parameters
47 ----------
48 pcoa : PCoAResults
49 The PCoA where the features will be projected onto.
50 features : FeatureTable[RelativeFrequency]
51 Variables to project onto the PCoA matrix
52
53 Returns
54 -------
55 biplot : PCoAResults % Properties('biplot')
56 The resulting PCoA matrix.
57 ]]></help>
58 <macros>
59 <import>qiime_citation.xml</import>
60 </macros>
61 <expand macro="qiime_citation"/>
62 </tool>