Mercurial > repos > florianbegusch > qiime2_suite
comparison qiime2/qiime_diversity_procrustes-analysis.xml @ 29:3ba9833030c1 draft
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| author | florianbegusch |
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| date | Fri, 04 Sep 2020 13:12:49 +0000 |
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| 28:c28331a63dfd | 29:3ba9833030c1 |
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| 1 <?xml version="1.0" ?> | |
| 2 <tool id="qiime_diversity_procrustes-analysis" name="qiime diversity procrustes-analysis" | |
| 3 version="2020.8"> | |
| 4 <description>Procrustes Analysis</description> | |
| 5 <requirements> | |
| 6 <requirement type="package" version="2020.8">qiime2</requirement> | |
| 7 </requirements> | |
| 8 <command><![CDATA[ | |
| 9 qiime diversity procrustes-analysis | |
| 10 | |
| 11 --i-reference=$ireference | |
| 12 | |
| 13 --i-other=$iother | |
| 14 | |
| 15 --p-dimensions=$pdimensions | |
| 16 | |
| 17 --o-transformed-reference=otransformedreference | |
| 18 | |
| 19 --o-transformed-other=otransformedother | |
| 20 | |
| 21 #if str($examples) != 'None': | |
| 22 --examples=$examples | |
| 23 #end if | |
| 24 | |
| 25 ; | |
| 26 cp otransformedother.qza $otransformedother | |
| 27 | |
| 28 ]]></command> | |
| 29 <inputs> | |
| 30 <param format="qza,no_unzip.zip" label="--i-reference: ARTIFACT The ordination matrix to which data is fitted to. PCoAResults [required]" name="ireference" optional="False" type="data" /> | |
| 31 <param format="qza,no_unzip.zip" label="--i-other: ARTIFACT The ordination matrix that\'s fitted to the PCoAResults reference ordination. [required]" name="iother" optional="False" type="data" /> | |
| 32 <param label="--p-dimensions: INTEGER Range(1, None) [default: 5]" min="1" name="pdimensions" optional="True" type="integer" value="5" /> | |
| 33 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> | |
| 34 | |
| 35 </inputs> | |
| 36 | |
| 37 <outputs> | |
| 38 <data format="qza" label="${tool.name} on ${on_string}: transformedreference.qza" name="otransformedreference" /> | |
| 39 <data format="qza" label="${tool.name} on ${on_string}: transformedother.qza" name="otransformedother" /> | |
| 40 | |
| 41 </outputs> | |
| 42 | |
| 43 <help><![CDATA[ | |
| 44 Procrustes Analysis | |
| 45 ############################################################### | |
| 46 | |
| 47 Fit two ordination matrices with Procrustes analysis | |
| 48 | |
| 49 Parameters | |
| 50 ---------- | |
| 51 reference : PCoAResults | |
| 52 The ordination matrix to which data is fitted to. | |
| 53 other : PCoAResults | |
| 54 The ordination matrix that's fitted to the reference ordination. | |
| 55 dimensions : Int % Range(1, None), optional | |
| 56 | |
| 57 Returns | |
| 58 ------- | |
| 59 transformed_reference : PCoAResults | |
| 60 A normalized version of the "reference" ordination matrix. | |
| 61 transformed_other : PCoAResults | |
| 62 A normalized and fitted version of the "other" ordination matrix. | |
| 63 ]]></help> | |
| 64 <macros> | |
| 65 <import>qiime_citation.xml</import> | |
| 66 </macros> | |
| 67 <expand macro="qiime_citation"/> | |
| 68 </tool> |