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comparison qiime2/qiime_composition_ancom.xml @ 2:51025741f326 draft

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Uploaded
author florianbegusch
date Thu, 18 Jul 2019 12:19:15 -0400
parents 370e0b6e9826
children de4c22a52df4
comparison
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1:255f48db74f8 2:51025741f326
7 <command><![CDATA[ 7 <command><![CDATA[
8 qiime composition ancom 8 qiime composition ancom
9 9
10 --i-table=$itable 10 --i-table=$itable
11 11
12 #if $input_files_mmetadatafile:
12 #def list_dict_to_string(list_dict): 13 #def list_dict_to_string(list_dict):
13 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 14 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
14 #for d in list_dict[1:]: 15 #for d in list_dict[1:]:
15 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name') 16 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name')
16 #end for 17 #end for
17 #return $file_list 18 #return $file_list
18 #end def 19 #end def
20 #end if
19 21
20 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile) --m-metadata-column="$mmetadatacolumn" 22 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile) --m-metadata-column="$mmetadatacolumn"
21 23
22 #if str($pdifferencefunction) != 'None': 24 #if str($pdifferencefunction) != 'None':
23 --p-difference-function=$pdifferencefunction 25 --p-difference-function=$pdifferencefunction