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comparison qiime2/qiime_cutadapt_demux-paired.xml @ 2:51025741f326 draft

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Uploaded
author florianbegusch
date Thu, 18 Jul 2019 12:19:15 -0400
parents 370e0b6e9826
children 914fa4daf16a
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1:255f48db74f8 2:51025741f326
6 </requirements> 6 </requirements>
7 <command><![CDATA[ 7 <command><![CDATA[
8 qiime cutadapt demux-paired 8 qiime cutadapt demux-paired
9 --i-seqs=$iseqs 9 --i-seqs=$iseqs
10 10
11
11 #def list_dict_to_string(list_dict): 12 #def list_dict_to_string(list_dict):
12 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 13 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
13 #for d in list_dict[1:]: 14 #for d in list_dict[1:]:
14 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name') 15 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name')
15 #end for 16 #end for
16 #return $file_list 17 #return $file_list
17 #end def 18 #end def
18 19
20 #if $input_files_mforwardbarcodesfile:
19 --m-forward-barcodes-file=$list_dict_to_string("$input_files_mforwardbarcodesfile") 21 --m-forward-barcodes-file=$list_dict_to_string("$input_files_mforwardbarcodesfile")
22 #end if
23
24 #if $input_files_mreversebarcodesfile:
20 --m-reverse-barcodes-file=$list_dict_to_string("$input_files_mreversebarcodesfile") 25 --m-reverse-barcodes-file=$list_dict_to_string("$input_files_mreversebarcodesfile")
26 #end if
21 27
22 --m-forward-barcodes-column="$mforwardbarcodescolumn" 28 --m-forward-barcodes-column="$mforwardbarcodescolumn"
23 29
24 #if str($mreversebarcodescolumn): 30 #if str($mreversebarcodescolumn):
25 --m-reverse-barcodes-column="$mreversebarcodescolumn" 31 --m-reverse-barcodes-column="$mreversebarcodescolumn"