Mercurial > repos > florianbegusch > qiime2_suite

comparison qiime2/qiime_cutadapt_demux-single.xml @ 2:51025741f326 draft

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Uploaded
author florianbegusch
date Thu, 18 Jul 2019 12:19:15 -0400
parents 370e0b6e9826
children 914fa4daf16a
comparison
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1:255f48db74f8 2:51025741f326
10 --i-seqs=$iseqs 10 --i-seqs=$iseqs
11 --m-barcodes-column="$mbarcodescolumn" 11 --m-barcodes-column="$mbarcodescolumn"
12 --o-per-sample-sequences=opersamplesequences 12 --o-per-sample-sequences=opersamplesequences
13 --o-untrimmed-sequences=ountrimmedsequences 13 --o-untrimmed-sequences=ountrimmedsequences
14 14
15
16 #if $input_files_mbarcodesfile:
15 #def list_dict_to_string(list_dict): 17 #def list_dict_to_string(list_dict):
16 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 18 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
17 #for d in list_dict[1:]: 19 #for d in list_dict[1:]:
18 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name') 20 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name')
19 #end for 21 #end for
20 #return $file_list 22 #return $file_list
21 #end def 23 #end def
22
23 --m-barcodes-file=$list_dict_to_string("$input_files_mbarcodesfile") 24 --m-barcodes-file=$list_dict_to_string("$input_files_mbarcodesfile")
25 #end if
24 26
25 #if $perrorrate: 27 #if $perrorrate:
26 --p-error-rate=$perrorrate 28 --p-error-rate=$perrorrate
27 #end if 29 #end if
28 30