Mercurial > repos > florianbegusch > qiime2_suite

comparison qiime2/qiime_demux_emp-single.xml @ 2:51025741f326 draft

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Uploaded
author florianbegusch
date Thu, 18 Jul 2019 12:19:15 -0400
parents 370e0b6e9826
children 914fa4daf16a
comparison
equal deleted inserted replaced
1:255f48db74f8 2:51025741f326
9 9
10 --i-seqs=$iseqs 10 --i-seqs=$iseqs
11 --m-barcodes-column="$mbarcodescolumn" 11 --m-barcodes-column="$mbarcodescolumn"
12 12
13 13
14 #if $input_files_mbarcodesfile:
14 #def list_dict_to_string(list_dict): 15 #def list_dict_to_string(list_dict):
15 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 16 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
16 #for d in list_dict[1:]: 17 #for d in list_dict[1:]:
17 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name') 18 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name')
18 #end for 19 #end for
19 #return $file_list 20 #return $file_list
20 #end def 21 #end def
21
22 --m-barcodes-file=$list_dict_to_string($input_files_mbarcodesfile) 22 --m-barcodes-file=$list_dict_to_string($input_files_mbarcodesfile)
23 #end if
23 24
24 25
25 #if $pnogolayerrorcorrection: 26 #if $pnogolayerrorcorrection:
26 --p-no-golay-error-correction 27 --p-no-golay-error-correction
27 #end if 28 #end if