Mercurial > repos > florianbegusch > qiime2_suite

comparison qiime2/qiime_diversity_beta-rarefaction.xml @ 2:51025741f326 draft

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Uploaded
author florianbegusch
date Thu, 18 Jul 2019 12:19:15 -0400
parents 370e0b6e9826
children 914fa4daf16a
comparison
equal deleted inserted replaced
1:255f48db74f8 2:51025741f326
26 26
27 #if str($pcolorscheme) != 'None': 27 #if str($pcolorscheme) != 'None':
28 --p-color-scheme=$pcolorscheme 28 --p-color-scheme=$pcolorscheme
29 #end if 29 #end if
30 30
31 #if $input_files_mmetadatafile:
31 #def list_dict_to_string(list_dict): 32 #def list_dict_to_string(list_dict):
32 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 33 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
33 #for d in list_dict[1:]: 34 #for d in list_dict[1:]:
34 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name') 35 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name')
35 #end for 36 #end for
36 #return $file_list 37 #return $file_list
37 #end def 38 #end def
38
39 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile) 39 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
40 40 #end if
41 41
42 --o-visualization=ovisualization 42 --o-visualization=ovisualization
43 ; 43 ;
44 cp mmetadatafile.qza $mmetadatafile; 44 cp mmetadatafile.qza $mmetadatafile;
45 qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path' 45 qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path'