Mercurial > repos > florianbegusch > qiime2_suite

comparison qiime2/qiime_diversity_core-metrics-phylogenetic.xml @ 2:51025741f326 draft

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Uploaded
author florianbegusch
date Thu, 18 Jul 2019 12:19:15 -0400
parents 370e0b6e9826
children 914fa4daf16a
comparison
equal deleted inserted replaced
1:255f48db74f8 2:51025741f326
14 #set $pnjobs = '${GALAXY_SLOTS:-4}' 14 #set $pnjobs = '${GALAXY_SLOTS:-4}'
15 #if str($pnjobs): 15 #if str($pnjobs):
16 --p-n-jobs="$pnjobs" 16 --p-n-jobs="$pnjobs"
17 #end if 17 #end if
18 18
19
20 #if $input_files_mmetadatafile:
19 #def list_dict_to_string(list_dict): 21 #def list_dict_to_string(list_dict):
20 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 22 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
21 #for d in list_dict[1:]: 23 #for d in list_dict[1:]:
22 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name') 24 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name')
23 #end for 25 #end for
24 #return $file_list 26 #return $file_list
25 #end def 27 #end def
28 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
29 #end if
26 30
27 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
28 31
29 32
30 --o-rarefied-table=orarefiedtable 33 --o-rarefied-table=orarefiedtable
31 --o-faith-pd-vector=ofaithpdvector 34 --o-faith-pd-vector=ofaithpdvector
32 --o-observed-otus-vector=oobservedotusvector 35 --o-observed-otus-vector=oobservedotusvector