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comparison qiime2/qiime_sample-classifier_maturity-index.xml @ 2:51025741f326 draft

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author florianbegusch
date Thu, 18 Jul 2019 12:19:15 -0400
parents 255f48db74f8
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1:255f48db74f8 2:51025741f326
6 </requirements> 6 </requirements>
7 <command> 7 <command>
8 <![CDATA[ 8 <![CDATA[
9 qiime sample-classifier maturity-index --i-table=$itable 9 qiime sample-classifier maturity-index --i-table=$itable
10 10
11 #if $input_files_mmetadatafile:
11 #def list_dict_to_string(list_dict): 12 #def list_dict_to_string(list_dict):
12 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 13 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
13 #for d in list_dict[1:]: 14 #for d in list_dict[1:]:
14 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name') 15 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
15 #end for 16 #end for
16 #return $file_list 17 #return $file_list
17 #end def 18 #end def
18 19
19 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile) --p-group-by="$pgroupby" --p-column="$pcolumn" --p-control="$pcontrol" 20 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
21 #end fi
22
23
24 --p-group-by="$pgroupby" --p-column="$pcolumn" --p-control="$pcontrol"
20 25
21 #set $pnjobs = '${GALAXY_SLOTS:-4}' 26 #set $pnjobs = '${GALAXY_SLOTS:-4}'
22 27
23 #if str($pnjobs): 28 #if str($pnjobs):
24 --p-n-jobs="$pnjobs" 29 --p-n-jobs="$pnjobs"