Mercurial > repos > florianbegusch > qiime2_suite
comparison qiime2/qiime_diversity_core-metrics.xml @ 4:914fa4daf16a draft
Fixes
author | florianbegusch |
---|---|
date | Wed, 31 Jul 2019 03:06:00 -0400 |
parents | 51025741f326 |
children | de4c22a52df4 |
comparison
equal
deleted
inserted
replaced
3:558645416841 | 4:914fa4daf16a |
---|---|
17 | 17 |
18 #if $input_files_mmetadatafile: | 18 #if $input_files_mmetadatafile: |
19 #def list_dict_to_string(list_dict): | 19 #def list_dict_to_string(list_dict): |
20 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') | 20 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') |
21 #for d in list_dict[1:]: | 21 #for d in list_dict[1:]: |
22 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name') | 22 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name') |
23 #end for | 23 #end for |
24 #return $file_list | 24 #return $file_list |
25 #end def | 25 #end def |
26 | |
27 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile) | 26 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile) |
28 #end if | 27 #end if |
29 | 28 |
30 --o-rarefied-table=orarefiedtable | 29 --o-rarefied-table=orarefiedtable |
31 --o-observed-otus-vector=oobservedotusvector | 30 --o-observed-otus-vector=oobservedotusvector |
55 ]]></command> | 54 ]]></command> |
56 <inputs> | 55 <inputs> |
57 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table containing the samples over which diversity metrics should be computed. [required]" name="itable" optional="False" type="data"/> | 56 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table containing the samples over which diversity metrics should be computed. [required]" name="itable" optional="False" type="data"/> |
58 <param label="--p-sampling-depth: INTEGER Range(1, None) The total frequency that each sample should be rarefied to prior to computing diversity metrics. [required]" name="psamplingdepth" optional="False" min="1" value="" type="integer"/> | 57 <param label="--p-sampling-depth: INTEGER Range(1, None) The total frequency that each sample should be rarefied to prior to computing diversity metrics. [required]" name="psamplingdepth" optional="False" min="1" value="" type="integer"/> |
59 | 58 |
60 <repeat name="input_files_mmetadatafile" optional="False" title="--m-metadata-file"> | 59 <repeat name="input_files_mmetadatafile" optional="False" title="--m-metadata-file [required]"> |
61 <param label="--m-metadata-file: METADATA... (multiple arguments will be merged) The sample metadata to use in the emperor plots. [required]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> | 60 <param label="--m-metadata-file: METADATA... (multiple arguments will be merged) The sample metadata to use in the emperor plots. [required]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> |
62 </repeat> | 61 </repeat> |
63 | 62 |
64 </inputs> | 63 </inputs> |
65 <outputs> | 64 <outputs> |