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comparison qiime2/qiime_feature-table_group.xml @ 4:914fa4daf16a draft

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Fixes
author florianbegusch
date Wed, 31 Jul 2019 03:06:00 -0400
parents 370e0b6e9826
children f190567fe3f6
comparison
equal deleted inserted replaced
3:558645416841 4:914fa4daf16a
11 --p-axis=$paxis 11 --p-axis=$paxis
12 --m-metadata-column="$mmetadatacolumn" 12 --m-metadata-column="$mmetadatacolumn"
13 --p-mode=$pmode 13 --p-mode=$pmode
14 14
15 15
16 #if $input_files_mmetadatafile: 16 --m-metadata-file=$mmedatafile
17 #def list_dict_to_string(list_dict):
18 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
19 #for d in list_dict[1:]:
20 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
21 #end for
22 #return $file_list
23 #end def
24 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
25 #end if
26
27 17
28 --o-grouped-table=ogroupedtable 18 --o-grouped-table=ogroupedtable
29 ; 19 ;
30 cp ogroupedtable.qza $ogroupedtable 20 cp ogroupedtable.qza $ogroupedtable
31 ]]></command> 21 ]]></command>
40 <option value="median-ceiling">median-ceiling</option> 30 <option value="median-ceiling">median-ceiling</option>
41 <option value="mean-ceiling">mean-ceiling</option> 31 <option value="mean-ceiling">mean-ceiling</option>
42 <option value="sum">sum</option> 32 <option value="sum">sum</option>
43 </param> 33 </param>
44 34
45 <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file"> 35 <param label="--m-metadata-file [required]" name="mmedatafile" type="data" format="tabular,qza,no_unzip.zip" />
46 <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" />
47 </repeat>
48 36
49 </inputs> 37 </inputs>
50 <outputs> 38 <outputs>
51 <data format="qza" label="${tool.name} on ${on_string}: groupedtable.qza" name="ogroupedtable"/> 39 <data format="qza" label="${tool.name} on ${on_string}: groupedtable.qza" name="ogroupedtable"/>
52 </outputs> 40 </outputs>