Mercurial > repos > florianbegusch > qiime2_suite

comparison qiime2/qiime_quality-control_evaluate-composition.xml @ 5:a025a4a89e07 draft

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Uploaded
author florianbegusch
date Mon, 05 Aug 2019 01:29:30 -0400
parents 51025741f326
children f190567fe3f6
comparison
equal deleted inserted replaced
4:914fa4daf16a 5:a025a4a89e07
9 9
10 --i-expected-features=$iexpectedfeatures 10 --i-expected-features=$iexpectedfeatures
11 --i-observed-features=$iobservedfeatures 11 --i-observed-features=$iobservedfeatures
12 12
13 13
14 #if $input_files_mmetadatafile: 14 #if $metadatafile:
15 #def list_dict_to_string(list_dict): 15 --m-metadata-file=$metadatafile
16 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
17 #for d in list_dict[1:]:
18 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
19 #end for
20 #return $file_list
21 #end def
22 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
23 #end if 16 #end if
24 17
25 18
26 #if $pdepth: 19 #if str($pdepth):
27 --p-depth=$pdepth 20 --p-depth=$pdepth
28 #end if 21 #end if
29 22
30 #if str($ppalette) != 'None': 23 #if str($ppalette) != 'None':
31 --p-palette=$ppalette 24 --p-palette=$ppalette
57 50
58 #if $pplotobservedfeatures: 51 #if $pplotobservedfeatures:
59 --p-plot-observed-features 52 --p-plot-observed-features
60 #end if 53 #end if
61 54
62 #if $pplotobservedfeaturesratio: 55 #if $pnoplotobservedfeaturesratio:
63 --p-plot-observed-features-ratio 56 --p-no-plot-observed-features-ratio
64 #end if 57 #end if
65 58
66 #if str($mmetadatacolumn): 59 #if str($mmetadatacolumn):
67 --m-metadata-column="$mmetadatacolumn" 60 --m-metadata-column="$mmetadatacolumn"
68 #end if 61 #end if
106 <param label="--p-plot-jaccard: --p-no-plot-jaccard Plot expected vs. observed Jaccard distances scores on score plot. [default: False]" name="pplotjaccard" selected="False" type="boolean"/> 99 <param label="--p-plot-jaccard: --p-no-plot-jaccard Plot expected vs. observed Jaccard distances scores on score plot. [default: False]" name="pplotjaccard" selected="False" type="boolean"/>
107 <param label="--p-plot-observed-features: --p-no-plot-observed-features Plot observed features count on score plot. [default: False]" name="pplotobservedfeatures" selected="False" type="boolean"/> 100 <param label="--p-plot-observed-features: --p-no-plot-observed-features Plot observed features count on score plot. [default: False]" name="pplotobservedfeatures" selected="False" type="boolean"/>
108 <param label="--p-no-plot-observed-features-ratio: Do not plot ratio of observed:expected features on score plot. [default: False]" name="pnoplotobservedfeaturesratio" selected="False" type="boolean"/> 101 <param label="--p-no-plot-observed-features-ratio: Do not plot ratio of observed:expected features on score plot. [default: False]" name="pnoplotobservedfeaturesratio" selected="False" type="boolean"/>
109 <param label="--m-metadata-column: COLUMN MetadataColumn[Categorical] Optional sample metadata that maps observed-features sample IDs to expected-features sample IDs. [optional]" name="mmetadatacolumn" optional="True" type="text"/> 102 <param label="--m-metadata-column: COLUMN MetadataColumn[Categorical] Optional sample metadata that maps observed-features sample IDs to expected-features sample IDs. [optional]" name="mmetadatacolumn" optional="True" type="text"/>
110 103
111 <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file"> 104 <param label="--m-metadata-file METADATA" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" />
112 <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> 105
113 </repeat>
114 106
115 </inputs> 107 </inputs>
116 <outputs> 108 <outputs>
117 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> 109 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
118 </outputs> 110 </outputs>