Mercurial > repos > florianbegusch > qiime2_suite
comparison qiime2/qiime_sample-classifier_classify-samples-ncv.xml @ 5:a025a4a89e07 draft
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author | florianbegusch |
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date | Mon, 05 Aug 2019 01:29:30 -0400 |
parents | 51025741f326 |
children | de4c22a52df4 |
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4:914fa4daf16a | 5:a025a4a89e07 |
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9 | 9 |
10 --i-table=$itable | 10 --i-table=$itable |
11 --m-metadata-column="$mmetadatacolumn" | 11 --m-metadata-column="$mmetadatacolumn" |
12 | 12 |
13 | 13 |
14 #if $input_files_mmetadatafile: | 14 |
15 #def list_dict_to_string(list_dict): | 15 #if $metadatafile: |
16 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') | 16 --m-metadata-file=$metadatafile |
17 #for d in list_dict[1:]: | |
18 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name') | |
19 #end for | |
20 #return $file_list | |
21 #end def | |
22 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile) | |
23 #end if | 17 #end if |
24 | 18 |
25 | 19 |
26 #if $pcv: | 20 #if $pcv: |
27 --p-cv=$pcv | 21 --p-cv=$pcv |
81 <option selected="True" value="None">Selection is Optional</option> | 75 <option selected="True" value="None">Selection is Optional</option> |
82 <option value="error">error</option> | 76 <option value="error">error</option> |
83 <option value="ignore">ignore</option> | 77 <option value="ignore">ignore</option> |
84 </param> | 78 </param> |
85 | 79 |
86 <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file"> | 80 <param label="--m-metadata-file METADATA" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" /> |
87 <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> | 81 |
88 </repeat> | |
89 </inputs> | 82 </inputs> |
90 <outputs> | 83 <outputs> |
91 <data format="qza" label="${tool.name} on ${on_string}: predictions.qza" name="opredictions"/> | 84 <data format="qza" label="${tool.name} on ${on_string}: predictions.qza" name="opredictions"/> |
92 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/> | 85 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/> |
93 </outputs> | 86 </outputs> |