comparison qiime2/qiime_sample-classifier_classify-samples-ncv.xml @ 5:a025a4a89e07 draft

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author florianbegusch
date Mon, 05 Aug 2019 01:29:30 -0400
parents 51025741f326
children de4c22a52df4
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4:914fa4daf16a 5:a025a4a89e07
9 9
10 --i-table=$itable 10 --i-table=$itable
11 --m-metadata-column="$mmetadatacolumn" 11 --m-metadata-column="$mmetadatacolumn"
12 12
13 13
14 #if $input_files_mmetadatafile: 14
15 #def list_dict_to_string(list_dict): 15 #if $metadatafile:
16 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 16 --m-metadata-file=$metadatafile
17 #for d in list_dict[1:]:
18 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
19 #end for
20 #return $file_list
21 #end def
22 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
23 #end if 17 #end if
24 18
25 19
26 #if $pcv: 20 #if $pcv:
27 --p-cv=$pcv 21 --p-cv=$pcv
81 <option selected="True" value="None">Selection is Optional</option> 75 <option selected="True" value="None">Selection is Optional</option>
82 <option value="error">error</option> 76 <option value="error">error</option>
83 <option value="ignore">ignore</option> 77 <option value="ignore">ignore</option>
84 </param> 78 </param>
85 79
86 <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file"> 80 <param label="--m-metadata-file METADATA" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" />
87 <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> 81
88 </repeat>
89 </inputs> 82 </inputs>
90 <outputs> 83 <outputs>
91 <data format="qza" label="${tool.name} on ${on_string}: predictions.qza" name="opredictions"/> 84 <data format="qza" label="${tool.name} on ${on_string}: predictions.qza" name="opredictions"/>
92 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/> 85 <data format="qza" label="${tool.name} on ${on_string}: featureimportance.qza" name="ofeatureimportance"/>
93 </outputs> 86 </outputs>