Mercurial > repos > florianbegusch > qiime2_suite

comparison qiime2/qiime_sample-classifier_heatmap.xml @ 5:a025a4a89e07 draft

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Uploaded
author florianbegusch
date Mon, 05 Aug 2019 01:29:30 -0400
parents 370e0b6e9826
children f190567fe3f6
comparison
equal deleted inserted replaced
4:914fa4daf16a 5:a025a4a89e07
9 9
10 --i-table=$itable 10 --i-table=$itable
11 --i-importance=$iimportance 11 --i-importance=$iimportance
12 12
13 13
14 #if $input_files_mmetadatafile: 14
15 #def list_dict_to_string(list_dict): 15
16 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 16 #if $metadatafile:
17 #for d in list_dict[1:]: 17 --m-metadata-file=$metadatafile
18 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name') 18 #end if
19 #end for 19
20 #return $file_list 20
21 #end def
22 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
23 #end if
24 21
25 22
26 23
27 #if str($mmetadatacolumn): 24 #if str($mmetadatacolumn):
28 --m-metadata-column="$mmetadatacolumn" 25 --m-metadata-column="$mmetadatacolumn"
29 #end if 26 #end if
30 27
31 #if $pfeaturecount: 28 #if str($pfeaturecount):
32 --p-feature-count=$pfeaturecount 29 --p-feature-count=$pfeaturecount
33 #end if 30 #end if
34 31
35 #if $pimportancethreshold: 32 #if str($pimportancethreshold):
36 --p-importance-threshold=$pimportancethreshold 33 --p-importance-threshold=$pimportancethreshold
37 #end if 34 #end if
38 35
39 #if $pgroupsamples: 36 #if $pgroupsamples:
40 --p-group-samples 37 --p-group-samples
295 <option value="gist_earth">gist_earth</option> 292 <option value="gist_earth">gist_earth</option>
296 <option value="seismic">seismic</option> 293 <option value="seismic">seismic</option>
297 <option value="PRGn">PRGn</option> 294 <option value="PRGn">PRGn</option>
298 </param> 295 </param>
299 296
300 <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file"> 297
301 <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> 298 <param label="--m-metadata-file METADATA" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" />
302 </repeat> 299
303 300
304 </inputs> 301 </inputs>
305 <outputs> 302 <outputs>
306 <data format="html" label="${tool.name} on ${on_string}: heatmap.qzv" name="oheatmap"/> 303 <data format="html" label="${tool.name} on ${on_string}: heatmap.qzv" name="oheatmap"/>
307 <data format="qza" label="${tool.name} on ${on_string}: filteredtable.qza" name="ofilteredtable"/> 304 <data format="qza" label="${tool.name} on ${on_string}: filteredtable.qza" name="ofilteredtable"/>