Mercurial > repos > florianbegusch > qiime2_suite
comparison qiime2/qiime_sample-classifier_scatterplot.xml @ 5:a025a4a89e07 draft
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| author | florianbegusch |
|---|---|
| date | Mon, 05 Aug 2019 01:29:30 -0400 |
| parents | 370e0b6e9826 |
| children | f190567fe3f6 |
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| 4:914fa4daf16a | 5:a025a4a89e07 |
|---|---|
| 8 qiime sample-classifier scatterplot | 8 qiime sample-classifier scatterplot |
| 9 | 9 |
| 10 --i-predictions=$ipredictions | 10 --i-predictions=$ipredictions |
| 11 --m-truth-column="$mtruthcolumn" | 11 --m-truth-column="$mtruthcolumn" |
| 12 | 12 |
| 13 --m-truth-file="$metadatafile" | 13 --m-truth-file="$mtruthfile" |
| 14 | 14 |
| 15 #if str($pmissingsamples) != 'None': | 15 #if str($pmissingsamples) != 'None': |
| 16 --p-missing-samples=$pmissingsamples | 16 --p-missing-samples=$pmissingsamples |
| 17 #end if | 17 #end if |
| 18 | 18 |
| 19 --o-visualization=ovisualization | 19 --o-visualization=ovisualization |
| 20 ; | 20 ; |
| 21 qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path' | 21 qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path' |
| 22 && cp -r out/* '$ovisualization.files_path' | 22 && cp -r out/* '$ovisualization.files_path' |
| 23 && mv '$ovisualization.files_path/index.html' '$ovisualization'; | 23 && mv '$ovisualization.files_path/index.html' '$ovisualization'; |
| 24 cp mtruthfile.qza $mtruthfile | |
| 25 ]]></command> | 24 ]]></command> |
| 26 <inputs> | 25 <inputs> |
| 27 <param format="qza,no_unzip.zip" label="--i-predictions: ARTIFACT SampleData[RegressorPredictions] Predicted values to plot on y axis. Must be predictions of numeric data produced by a sample regressor. [required]" name="ipredictions" optional="False" type="data"/> | 26 <param format="qza,no_unzip.zip" label="--i-predictions: ARTIFACT SampleData[RegressorPredictions] Predicted values to plot on y axis. Must be predictions of numeric data produced by a sample regressor. [required]" name="ipredictions" optional="False" type="data"/> |
| 28 <param label="--m-truth-column: COLUMN MetadataColumn[Numeric] Metadata column (true values) to plot on x axis. [required]" name="mtruthcolumn" optional="False" type="text"/> | 27 <param label="--m-truth-column: COLUMN MetadataColumn[Numeric] Metadata column (true values) to plot on x axis. [required]" name="mtruthcolumn" optional="False" type="text"/> |
| 29 <param label="--p-missing-samples: " name="pmissingsamples" optional="True" type="select"> | 28 <param label="--p-missing-samples: " name="pmissingsamples" optional="True" type="select"> |
| 30 <option selected="True" value="None">Selection is Optional</option> | 29 <option selected="True" value="None">Selection is Optional</option> |
| 31 <option value="error">error</option> | 30 <option value="error">error</option> |
| 32 <option value="ignore">ignore</option> | 31 <option value="ignore">ignore</option> |
| 33 </param> | 32 </param> |
| 34 | 33 |
| 35 <param label="--m-truth-file: Metadata file or artifact viewable as metadata." name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" /> | 34 <param label="--m-truth-file: Metadata file or artifact viewable as metadata." name="mtruthfile" type="data" format="tabular,qza,no_unzip.zip" /> |
| 36 | 35 |
| 37 </inputs> | 36 </inputs> |
| 38 <outputs> | 37 <outputs> |
| 39 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> | 38 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> |
| 40 </outputs> | 39 </outputs> |