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comparison qiime2/qiime_diversity_pcoa-biplot.xml @ 14:a0a8d77a991c draft

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author florianbegusch
date Thu, 03 Sep 2020 09:51:29 +0000
parents f190567fe3f6
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13:887cd4ad8e16 14:a0a8d77a991c
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <tool id="qiime_diversity_pcoa-biplot" name="qiime diversity pcoa-biplot" version="2019.7"> 2 <tool id="qiime_diversity_pcoa-biplot" name="qiime diversity pcoa-biplot"
3 <description> - Principal Coordinate Analysis Biplot</description> 3 version="2020.8">
4 <requirements> 4 <description>Principal Coordinate Analysis Biplot</description>
5 <requirement type="package" version="2019.7">qiime2</requirement> 5 <requirements>
6 </requirements> 6 <requirement type="package" version="2020.8">qiime2</requirement>
7 <command><![CDATA[ 7 </requirements>
8 <command><![CDATA[
8 qiime diversity pcoa-biplot 9 qiime diversity pcoa-biplot
9 10
10 --i-pcoa=$ipcoa 11 --i-pcoa=$ipcoa
12
11 --i-features=$ifeatures 13 --i-features=$ifeatures
12 14
13 --o-biplot=obiplot 15 --o-biplot=obiplot
16
17 #if str($examples) != 'None':
18 --examples=$examples
19 #end if
20
14 ; 21 ;
15 cp obiplot.qza $obiplot 22 cp obiplot.qza $obiplot
16 ]]></command> 23
17 <inputs> 24 ]]></command>
18 <param format="qza,no_unzip.zip" label="--i-pcoa: ARTIFACT The PCoA where the features will be projected onto. PCoAResults [required]" name="ipcoa" optional="False" type="data"/> 25 <inputs>
19 <param format="qza,no_unzip.zip" label="--i-features: ARTIFACT FeatureTable[RelativeFrequency] Variables to project onto the PCoA matrix [required]" name="ifeatures" optional="False" type="data"/> 26 <param format="qza,no_unzip.zip" label="--i-pcoa: ARTIFACT The PCoA where the features will be projected onto. PCoAResults [required]" name="ipcoa" optional="False" type="data" />
20 </inputs> 27 <param format="qza,no_unzip.zip" label="--i-features: ARTIFACT FeatureTable[RelativeFrequency] Variables to project onto the PCoA matrix [required]" name="ifeatures" optional="False" type="data" />
21 <outputs> 28 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
22 <data format="qza" label="${tool.name} on ${on_string}: biplot.qza" name="obiplot"/> 29
23 </outputs> 30 </inputs>
24 <help><![CDATA[ 31
32 <outputs>
33 <data format="qza" label="${tool.name} on ${on_string}: biplot.qza" name="obiplot" />
34
35 </outputs>
36
37 <help><![CDATA[
25 Principal Coordinate Analysis Biplot 38 Principal Coordinate Analysis Biplot
26 #################################### 39 ###############################################################
27 40
28 Project features into a principal coordinates matrix. The features used 41 Project features into a principal coordinates matrix. The features used
29 should be the features used to compute the distance matrix. It is 42 should be the features used to compute the distance matrix. It is
30 recommended that these variables be normalized in cases of dimensionally 43 recommended that these variables be normalized in cases of dimensionally
31 heterogeneous physical variables. 44 heterogeneous physical variables.
39 52
40 Returns 53 Returns
41 ------- 54 -------
42 biplot : PCoAResults % Properties('biplot') 55 biplot : PCoAResults % Properties('biplot')
43 The resulting PCoA matrix. 56 The resulting PCoA matrix.
44 ]]></help> 57 ]]></help>
45 <macros> 58 <macros>
46 <import>qiime_citation.xml</import> 59 <import>qiime_citation.xml</import>
47 </macros> 60 </macros>
48 <expand macro="qiime_citation"/> 61 <expand macro="qiime_citation"/>
49 </tool> 62 </tool>