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comparison qiime2/qiime_feature-classifier_fit-classifier-naive-bayes.xml @ 14:a0a8d77a991c draft

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author florianbegusch
date Thu, 03 Sep 2020 09:51:29 +0000
parents 21c7954105a9
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13:887cd4ad8e16 14:a0a8d77a991c
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <tool id="qiime_feature-classifier_fit-classifier-naive-bayes" name="qiime feature-classifier fit-classifier-naive-bayes" version="2019.7"> 2 <tool id="qiime_feature-classifier_fit-classifier-naive-bayes" name="qiime feature-classifier fit-classifier-naive-bayes"
3 <description> - Train the naive_bayes classifier</description> 3 version="2020.8">
4 <requirements> 4 <description>Train the naive_bayes classifier</description>
5 <requirement type="package" version="2019.7">qiime2</requirement> 5 <requirements>
6 </requirements> 6 <requirement type="package" version="2020.8">qiime2</requirement>
7 <command><![CDATA[ 7 </requirements>
8 8 <command><![CDATA[
9
10 #if str( $id_to_taxonomy_fp.selector ) == 'history'
11 #set $tax = $id_to_taxonomy_fp.taxonomy_fp
12 #else:
13 #set $tax_path = $id_to_taxonomy_fp.taxonomy_fp.fields.path
14 qiime tools import --type 'FeatureData[Taxonomy]' --input-format HeaderlessTSVTaxonomyFormat --input-path $tax_path --output-path ref-taxonomy.qza;
15 #set $tax='ref-taxonomy.qza'
16 #end if
17
18
19 qiime feature-classifier fit-classifier-naive-bayes 9 qiime feature-classifier fit-classifier-naive-bayes
20 10
21
22 --i-reference-taxonomy '$tax'
23
24
25 --i-reference-reads=$ireferencereads 11 --i-reference-reads=$ireferencereads
26 12
13 --i-reference-taxonomy=$ireferencetaxonomy
14
27 #if str($iclassweight) != 'None': 15 #if str($iclassweight) != 'None':
28 --i-class-weight=$iclassweight 16 --i-class-weight=$iclassweight
29 #end if 17 #end if
30 18
31 #if str($pclassifyalpha): 19 --p-classify--alpha=$pclassifyalpha
32 --p-classify--alpha=$pclassifyalpha 20
33 #end if 21 --p-classify--chunk-size=$pclassifychunksize
34
35 #if str($pclassifychunksize):
36 --p-classify--chunk-size=$pclassifychunksize
37 #end if
38
39
40
41
42 #if '__sq__' in str($pclassifyclassprior):
43 #set $pclassifyclassprior_temp = $pclassifyclassprior.replace('__sq__', "'")
44 #set $pclassifyclassprior = $pclassifyclassprior_temp
45 #end if
46 22
47 #if str($pclassifyclassprior): 23 #if str($pclassifyclassprior):
48 --p-classify--class-prior="$pclassifyclassprior" 24 --p-classify--class-prior=$pclassifyclassprior
49 #end if 25 #end if
50
51
52
53
54 #if $pclassifyfitprior: 26 #if $pclassifyfitprior:
55 --p-classify--fit-prior 27 --p-classify--fit-prior
56 #end if 28 #end if
57 29
58 #if $pfeatextalternatesign: 30 #if $pfeatextalternatesign:
59 --p-feat-ext--alternate-sign 31 --p-feat-ext--alternate-sign
60 #end if 32 #end if
61 33
62
63
64
65
66 #if '__sq__' in str($pfeatextanalyzer):
67 #set $pfeatextanalyzer_temp = $pfeatextanalyzer.replace('__sq__', "'")
68 #set $pfeatextanalyzer = $pfeatextanalyzer_temp
69 #end if
70
71 #if str($pfeatextanalyzer): 34 #if str($pfeatextanalyzer):
72 --p-feat-ext--analyzer="$pfeatextanalyzer" 35 --p-feat-ext--analyzer=$pfeatextanalyzer
73 #end if 36 #end if
74
75
76
77
78
79 #if $pfeatextbinary: 37 #if $pfeatextbinary:
80 --p-feat-ext--binary 38 --p-feat-ext--binary
81 #end if 39 #end if
82 40
83
84
85 #if '__sq__' in str($pfeatextdecodeerror):
86 #set $pfeatextdecodeerror_temp = $pfeatextdecodeerror.replace('__sq__', "'")
87 #set $pfeatextdecodeerror = $pfeatextdecodeerror_temp
88 #end if
89
90 #if str($pfeatextdecodeerror): 41 #if str($pfeatextdecodeerror):
91 --p-feat-ext--decode-error="$pfeatextdecodeerror" 42 --p-feat-ext--decode-error=$pfeatextdecodeerror
92 #end if 43 #end if
93
94
95
96
97
98 #if '__sq__' in str($pfeatextencoding):
99 #set $pfeatextencoding_temp = $pfeatextencoding.replace('__sq__', "'")
100 #set $pfeatextencoding = $pfeatextencoding_temp
101 #end if
102
103 #if str($pfeatextencoding): 44 #if str($pfeatextencoding):
104 --p-feat-ext--encoding="$pfeatextencoding" 45 --p-feat-ext--encoding=$pfeatextencoding
105 #end if 46 #end if
106
107
108
109
110
111 #if '__sq__' in str($pfeatextinput):
112 #set $pfeatextinput_temp = $pfeatextinput.replace('__sq__', "'")
113 #set $pfeatextinput = $pfeatextinput_temp
114 #end if
115
116 #if str($pfeatextinput): 47 #if str($pfeatextinput):
117 --p-feat-ext--input="$pfeatextinput" 48 --p-feat-ext--input=$pfeatextinput
118 #end if 49 #end if
119
120
121
122
123 #if $pnofeatextlowercase: 50 #if $pnofeatextlowercase:
124 --p-no-feat-ext--lowercase 51 --p-no-feat-ext--lowercase
125 #end if 52 #end if
126 53
127 #if str($pfeatextnfeatures): 54 --p-feat-ext--n-features=$pfeatextnfeatures
128 --p-feat-ext--n-features=$pfeatextnfeatures 55
129 #end if 56 #if '__ob__' in str($pfeatextngramrange):
130 57 #set $pfeatextngramrange_temp = $pfeatextngramrange.replace('__ob__', '[')
131 58 #set $pfeatextngramrange = $pfeatextngramrange_temp
132 59 #end if
133 60 #if '__cb__' in str($pfeatextngramrange):
61 #set $pfeatextngramrange_temp = $pfeatextngramrange.replace('__cb__', ']')
62 #set $pfeatextngramrange = $pfeatextngramrange_temp
63 #end if
64 #if 'X' in str($pfeatextngramrange):
65 #set $pfeatextngramrange_temp = $pfeatextngramrange.replace('X', '\\')
66 #set $pfeatextngramrange = $pfeatextngramrange_temp
67 #end if
134 #if '__sq__' in str($pfeatextngramrange): 68 #if '__sq__' in str($pfeatextngramrange):
135 #set $pfeatextngramrange_temp = $pfeatextngramrange.replace('__sq__', "'") 69 #set $pfeatextngramrange_temp = $pfeatextngramrange.replace('__sq__', "'")
136 #set $pfeatextngramrange = $pfeatextngramrange_temp 70 #set $pfeatextngramrange = $pfeatextngramrange_temp
137 #end if 71 #end if
138 72 #if '__db__' in str($pfeatextngramrange):
139 #if '__ob__' in str($pfeatextngramrange): 73 #set $pfeatextngramrange_temp = $pfeatextngramrange.replace('__db__', '"')
140 #set $pfeatextngramrange_temp = $pfeatextngramrange.replace('__ob__', '[')
141 #set $pfeatextngramrange = $pfeatextngramrange_temp
142 #end if
143 #if 'X' in str($pfeatextngramrange):
144 #set $pfeatextngramrange_temp = $pfeatextngramrange.replace('X', '\\')
145 #set $pfeatextngramrange = $pfeatextngramrange_temp 74 #set $pfeatextngramrange = $pfeatextngramrange_temp
146 #end if 75 #end if
147 76
148 #if str($pfeatextngramrange): 77 #if str($pfeatextngramrange):
149 --p-feat-ext--ngram-range="$pfeatextngramrange" 78 --p-feat-ext--ngram-range=$pfeatextngramrange
150 #end if
151
152
153
154
155
156 #if $pfeatextnonnegative:
157 --p-feat-ext--non-negative
158 #end if
159
160
161 #if '__sq__' in str($pfeatextnorm):
162 #set $pfeatextnorm_temp = $pfeatextnorm.replace('__sq__', "'")
163 #set $pfeatextnorm = $pfeatextnorm_temp
164 #end if 79 #end if
165 80
166 #if str($pfeatextnorm): 81 #if str($pfeatextnorm):
167 --p-feat-ext--norm="$pfeatextnorm" 82 --p-feat-ext--norm=$pfeatextnorm
168 #end if 83 #end if
169
170
171
172
173 #if '__sq__' in str($pfeatextpreprocessor):
174 #set $pfeatextpreprocessor_temp = $pfeatextpreprocessor.replace('__sq__', "'")
175 #set $pfeatextpreprocessor = $pfeatextpreprocessor_temp
176 #end if
177
178 #if str($pfeatextpreprocessor): 84 #if str($pfeatextpreprocessor):
179 --p-feat-ext--preprocessor="$pfeatextpreprocessor" 85 --p-feat-ext--preprocessor=$pfeatextpreprocessor
180 #end if 86 #end if
181
182
183
184
185 #if '__sq__' in str($pfeatextstopwords):
186 #set $pfeatextstopwords_temp = $pfeatextstopwords.replace('__sq__', "'")
187 #set $pfeatextstopwords = $pfeatextstopwords_temp
188 #end if
189
190 #if str($pfeatextstopwords): 87 #if str($pfeatextstopwords):
191 --p-feat-ext--stop-words="$pfeatextstopwords" 88 --p-feat-ext--stop-words=$pfeatextstopwords
192 #end if 89 #end if
193
194
195
196
197
198 #if '__sq__' in str($pfeatextstripaccents):
199 #set $pfeatextstripaccents_temp = $pfeatextstripaccents.replace('__sq__', "'")
200 #set $pfeatextstripaccents = $pfeatextstripaccents_temp
201 #end if
202
203 #if str($pfeatextstripaccents): 90 #if str($pfeatextstripaccents):
204 --p-feat-ext--strip-accents="$pfeatextstripaccents" 91 --p-feat-ext--strip-accents=$pfeatextstripaccents
205 #end if 92 #end if
206 93 #if '__ob__' in str($pfeatexttokenpattern):
207 94 #set $pfeatexttokenpattern_temp = $pfeatexttokenpattern.replace('__ob__', '[')
208 95 #set $pfeatexttokenpattern = $pfeatexttokenpattern_temp
209 96 #end if
210 97 #if '__cb__' in str($pfeatexttokenpattern):
211 98 #set $pfeatexttokenpattern_temp = $pfeatexttokenpattern.replace('__cb__', ']')
99 #set $pfeatexttokenpattern = $pfeatexttokenpattern_temp
100 #end if
101 #if 'X' in str($pfeatexttokenpattern):
102 #set $pfeatexttokenpattern_temp = $pfeatexttokenpattern.replace('X', '\\')
103 #set $pfeatexttokenpattern = $pfeatexttokenpattern_temp
104 #end if
212 #if '__sq__' in str($pfeatexttokenpattern): 105 #if '__sq__' in str($pfeatexttokenpattern):
213 #set $pfeatexttokenpattern_temp = $pfeatexttokenpattern.replace('__sq__', "'") 106 #set $pfeatexttokenpattern_temp = $pfeatexttokenpattern.replace('__sq__', "'")
214 #set $pfeatexttokenpattern = $pfeatexttokenpattern_temp 107 #set $pfeatexttokenpattern = $pfeatexttokenpattern_temp
215 #end if 108 #end if
216 109 #if '__db__' in str($pfeatexttokenpattern):
217 #if '__ob__' in str($pfeatexttokenpattern): 110 #set $pfeatexttokenpattern_temp = $pfeatexttokenpattern.replace('__db__', '"')
218 #set $pfeatexttokenpattern_temp = $pfeatexttokenpattern.replace('__ob__', '[')
219 #set $pfeatexttokenpattern = $pfeatexttokenpattern_temp
220 #end if
221
222 #if 'X' in str($pfeatexttokenpattern):
223 #set $pfeatexttokenpattern_temp = $pfeatexttokenpattern.replace('X', '\\')
224 #set $pfeatexttokenpattern = $pfeatexttokenpattern_temp 111 #set $pfeatexttokenpattern = $pfeatexttokenpattern_temp
225 #end if 112 #end if
226 113
227 #if str($pfeatexttokenpattern): 114 #if str($pfeatexttokenpattern):
228 --p-feat-ext--token-pattern="$pfeatexttokenpattern" 115 --p-feat-ext--token-pattern=$pfeatexttokenpattern
229 #end if
230
231
232
233
234
235 #if '__sq__' in str($pfeatexttokenizer):
236 #set $pfeatexttokenizer_temp = $pfeatexttokenizer.replace('__sq__', "'")
237 #set $pfeatexttokenizer = $pfeatexttokenizer_temp
238 #end if 116 #end if
239 117
240 #if str($pfeatexttokenizer): 118 #if str($pfeatexttokenizer):
241 --p-feat-ext--tokenizer="$pfeatexttokenizer" 119 --p-feat-ext--tokenizer=$pfeatexttokenizer
120 #end if
121 #if $pverbose:
122 --p-verbose
242 #end if 123 #end if
243 124
244 --o-classifier=oclassifier 125 --o-classifier=oclassifier
126
127 #if str($examples) != 'None':
128 --examples=$examples
129 #end if
130
245 ; 131 ;
246 cp oclassifier.qza $oclassifier 132 cp oclassifier.qza $oclassifier
247 ]]></command> 133
248 <inputs> 134 ]]></command>
249 <param format="qza,no_unzip.zip" label="--i-reference-reads: ARTIFACT FeatureData[Sequence] [required]" name="ireferencereads" optional="False" type="data"/> 135 <inputs>
250 <param format="qza,no_unzip.zip" label="--i-class-weight: ARTIFACT FeatureTable[RelativeFrequency] [optional]" name="iclassweight" optional="True" type="data"/> 136 <param format="qza,no_unzip.zip" label="--i-reference-reads: ARTIFACT FeatureData[Sequence] [required]" name="ireferencereads" optional="False" type="data" />
251 137 <param format="qza,no_unzip.zip" label="--i-reference-taxonomy: ARTIFACT FeatureData[Taxonomy] [required]" name="ireferencetaxonomy" optional="False" type="data" />
252 <conditional name="id_to_taxonomy_fp" optional="True"> 138 <param format="qza,no_unzip.zip" label="--i-class-weight: ARTIFACT FeatureTable[RelativeFrequency] [optional]" name="iclassweight" optional="False" type="data" />
253 <param name="selector" type="select" label="Reference taxonomy to query"> 139 <param label="--p-classify--alpha: NUMBER [default: 0.001]" name="pclassifyalpha" optional="True" type="float" value="0.001" />
254 <option value="cached">Public databases</option> 140 <param label="--p-classify--chunk-size: INTEGER [default: 20000]" name="pclassifychunksize" optional="True" type="integer" value="20000" />
255 <option value="history">Databases from your history</option> 141 <param label="--p-classify--class-prior: TEXT [default: \'null\']" name="pclassifyclassprior" optional="False" type="text" value="\'null\'" />
256 </param> 142 <param label="--p-classify--fit-prior: --p-classify--fit-prior: / --p-no-classify--fit-prior [default: False]" name="pclassifyfitprior" selected="False" type="boolean" />
257 <when value="cached"> 143 <param label="--p-feat-ext--alternate-sign: --p-feat-ext--alternate-sign: / --p-no-feat-ext--alternate-sign [default: False]" name="pfeatextalternatesign" selected="False" type="boolean" />
258 <param argument="--taxonomy_fp" label="Reference taxonomy" type="select" optional="True"> 144 <param label="--p-feat-ext--analyzer: TEXT [default: \'char_wb\']" name="pfeatextanalyzer" optional="False" type="text" value="\'char_wb\'" />
259 <options from_data_table="qiime_taxonomy" /> 145 <param label="--p-feat-ext--binary: --p-feat-ext--binary: / --p-no-feat-ext--binary [default: False]" name="pfeatextbinary" selected="False" type="boolean" />
260 </param> 146 <param label="--p-feat-ext--decode-error: TEXT [default: \'strict\']" name="pfeatextdecodeerror" optional="False" type="text" value="\'strict\'" />
261 </when> 147 <param label="--p-feat-ext--encoding: TEXT [default: \'utf-8\']" name="pfeatextencoding" optional="False" type="text" value="\'utf-8\'" />
262 <when value="history"> 148 <param label="--p-feat-ext--input: TEXT [default: \'content\']" name="pfeatextinput" optional="False" type="text" value="\'content\'" />
263 <param argument="--taxonomy_fp" type="data" format="qza,no_unzip.zip" label="Reference databases" optional="True" /> 149 <param label="--p-no-feat-ext--lowercase: Do not [default: True]" name="pnofeatextlowercase" selected="False" type="boolean" />
264 </when> 150 <param label="--p-feat-ext--n-features: INTEGER [default: 8192]" name="pfeatextnfeatures" optional="True" type="integer" value="8192" />
265 </conditional> 151 <param label="--p-feat-ext--ngram-range: TEXT [default: \'[7, 7]\']" name="pfeatextngramrange" optional="False" type="text" value="\'[7, 7]" />
266 152 <param label="--p-feat-ext--norm: TEXT [default: \'l2\']" name="pfeatextnorm" optional="False" type="text" value="\'l2\'" />
267 <param label="--p-classify--alpha: NUMBER [default: 0.001]" name="pclassifyalpha" optional="True" type="float" value="0.001"/> 153 <param label="--p-feat-ext--preprocessor: TEXT [default: \'null\']" name="pfeatextpreprocessor" optional="False" type="text" value="\'null\'" />
268 <param label="--p-classify--chunk-size: INTEGER [default: 20000]" name="pclassifychunksize" optional="True" type="integer" value="20000"/> 154 <param label="--p-feat-ext--stop-words: TEXT [default: \'null\']" name="pfeatextstopwords" optional="False" type="text" value="\'null\'" />
269 <param label="--p-classify--class-prior: TEXT [default: 'null']" name="pclassifyclassprior" optional="True" type="text" value="null"/> 155 <param label="--p-feat-ext--strip-accents: TEXT [default: \'null\']" name="pfeatextstripaccents" optional="False" type="text" value="\'null\'" />
270 <param label="--p-classify--fit-prior: --p-no-classify--fit-prior [default: False]" name="pclassifyfitprior" selected="False" type="boolean"/> 156 <param label="--p-feat-ext--token-pattern: TEXT [default: \'(?u)\\\\b\\\\w\\\\w+\\\\b\']" name="pfeatexttokenpattern" optional="False" type="text" value="\'(?u)\\\\b\\\\w\\\\w+\\\\b\'" />
271 <param label="--p-feat-ext--alternate-sign: --p-no-feat-ext--alternate-sign [default: False]" name="pfeatextalternatesign" selected="False" type="boolean"/> 157 <param label="--p-feat-ext--tokenizer: TEXT [default: \'null\']" name="pfeatexttokenizer" optional="False" type="text" value="\'null\'" />
272 <param label="--p-feat-ext--analyzer: TEXT [default: 'char_wb']" name="pfeatextanalyzer" optional="True" type="text" value="char_wb"/> 158 <param label="--p-verbose: --p-verbose: / --p-no-verbose [default: False]" name="pverbose" selected="False" type="boolean" />
273 <param label="--p-feat-ext--binary: --p-no-feat-ext--binary [default: False]" name="pfeatextbinary" selected="False" type="boolean"/> 159 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
274 <param label="--p-feat-ext--decode-error: TEXT [default: 'strict']" name="pfeatextdecodeerror" optional="True" type="text" value="strict"/> 160
275 <param label="--p-feat-ext--encoding: TEXT [default: 'utf-8']" name="pfeatextencoding" optional="True" type="text" value="utf-8"/> 161 </inputs>
276 <param label="--p-feat-ext--input: TEXT [default: 'content']" name="pfeatextinput" optional="True" type="text" value="content"/> 162
277 <param label="--p-no-feat-ext--lowercase: [default: False]" name="pnofeatextlowercase" selected="False" type="boolean"/> 163 <outputs>
278 <param label="--p-feat-ext--n-features: INTEGER [default: 8192]" name="pfeatextnfeatures" optional="True" type="integer" value="8192"/> 164 <data format="qza" label="${tool.name} on ${on_string}: classifier.qza" name="oclassifier" />
279 <param label="--p-feat-ext--ngram-range: TEXT [default: '[7, 7]']" name="pfeatextngramrange" optional="True" type="text" value="[7, 7]"/> 165
280 <param label="--p-feat-ext--non-negative: --p-no-feat-ext--non-negative [default: False]" name="pfeatextnonnegative" selected="False" type="boolean"/> 166 </outputs>
281 <param label="--p-feat-ext--norm: TEXT [default: 'l2']" name="pfeatextnorm" optional="True" type="text" value="l2"/> 167
282 <param label="--p-feat-ext--preprocessor: TEXT [default: 'null']" name="pfeatextpreprocessor" optional="True" type="text" value="null"/> 168 <help><![CDATA[
283 <param label="--p-feat-ext--stop-words: TEXT [default: 'null']" name="pfeatextstopwords" optional="True" type="text" value="null"/>
284 <param label="--p-feat-ext--strip-accents: TEXT [default: 'null']" name="pfeatextstripaccents" optional="True" type="text" value="null"/>
285 <param label="--p-feat-ext--token-pattern: TEXT [default: '(?u)\\b\\w\\w+\\b']" name="pfeatexttokenpattern" optional="True" type="text" value="(?u)\\b\\w\\w+\\b"/>
286 <param label="--p-feat-ext--tokenizer: TEXT [default: 'null']" name="pfeatexttokenizer" optional="True" type="text" value="null"/>
287 </inputs>
288 <outputs>
289 <data format="qza" label="${tool.name} on ${on_string}: classifier.qza" name="oclassifier"/>
290 </outputs>
291 <help><![CDATA[
292 Train the naive_bayes classifier 169 Train the naive_bayes classifier
293 ################################ 170 ###############################################################
294 171
295 Create a scikit-learn naive_bayes classifier for reads 172 Create a scikit-learn naive_bayes classifier for reads
296 173
297 Parameters 174 Parameters
298 ---------- 175 ----------
299 reference_reads : FeatureData[Sequence] 176 reference_reads : FeatureData[Sequence]
300 \
301
302 reference_taxonomy : FeatureData[Taxonomy] 177 reference_taxonomy : FeatureData[Taxonomy]
303 \
304
305 class_weight : FeatureTable[RelativeFrequency], optional 178 class_weight : FeatureTable[RelativeFrequency], optional
306 \
307
308 classify__alpha : Float, optional 179 classify__alpha : Float, optional
309 \
310
311 classify__chunk_size : Int, optional 180 classify__chunk_size : Int, optional
312 \
313
314 classify__class_prior : Str, optional 181 classify__class_prior : Str, optional
315 \
316
317 classify__fit_prior : Bool, optional 182 classify__fit_prior : Bool, optional
318 \
319
320 feat_ext__alternate_sign : Bool, optional 183 feat_ext__alternate_sign : Bool, optional
321 \
322
323 feat_ext__analyzer : Str, optional 184 feat_ext__analyzer : Str, optional
324 \
325
326 feat_ext__binary : Bool, optional 185 feat_ext__binary : Bool, optional
327 \
328
329 feat_ext__decode_error : Str, optional 186 feat_ext__decode_error : Str, optional
330 \
331
332 feat_ext__encoding : Str, optional 187 feat_ext__encoding : Str, optional
333 \
334
335 feat_ext__input : Str, optional 188 feat_ext__input : Str, optional
336 \
337
338 feat_ext__lowercase : Bool, optional 189 feat_ext__lowercase : Bool, optional
339 \
340
341 feat_ext__n_features : Int, optional 190 feat_ext__n_features : Int, optional
342 \
343
344 feat_ext__ngram_range : Str, optional 191 feat_ext__ngram_range : Str, optional
345 \
346
347 feat_ext__non_negative : Bool, optional
348 \
349
350 feat_ext__norm : Str, optional 192 feat_ext__norm : Str, optional
351 \
352
353 feat_ext__preprocessor : Str, optional 193 feat_ext__preprocessor : Str, optional
354 \
355
356 feat_ext__stop_words : Str, optional 194 feat_ext__stop_words : Str, optional
357 \
358
359 feat_ext__strip_accents : Str, optional 195 feat_ext__strip_accents : Str, optional
360 \
361
362 feat_ext__token_pattern : Str, optional 196 feat_ext__token_pattern : Str, optional
363 \
364
365 feat_ext__tokenizer : Str, optional 197 feat_ext__tokenizer : Str, optional
366 \ 198 verbose : Bool, optional
367 199
368 Returns 200 Returns
369 ------- 201 -------
370 classifier : TaxonomicClassifier 202 classifier : TaxonomicClassifier
371 \ 203 ]]></help>
372 204 <macros>
373 ]]></help>
374 <macros>
375 <import>qiime_citation.xml</import> 205 <import>qiime_citation.xml</import>
376 </macros> 206 </macros>
377 <expand macro="qiime_citation"/> 207 <expand macro="qiime_citation"/>
378 </tool> 208 </tool>