Mercurial > repos > florianbegusch > qiime2_suite
comparison qiime2-2020.8/qiime_feature-table_merge-seqs.xml @ 20:d93d8888f0b0 draft
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author | florianbegusch |
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date | Fri, 04 Sep 2020 12:44:24 +0000 |
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19:6c48f8d82424 | 20:d93d8888f0b0 |
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1 <?xml version="1.0" ?> | |
2 <tool id="qiime_feature-table_merge-seqs" name="qiime feature-table merge-seqs" | |
3 version="2020.8"> | |
4 <description>Combine collections of feature sequences</description> | |
5 <requirements> | |
6 <requirement type="package" version="2020.8">qiime2</requirement> | |
7 </requirements> | |
8 <command><![CDATA[ | |
9 qiime feature-table merge-seqs | |
10 # if $input_files_idata: | |
11 # def list_dict_to_string(list_dict): | |
12 # set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') | |
13 # for d in list_dict[1:]: | |
14 # set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name') | |
15 # end for | |
16 # return $file_list | |
17 # end def | |
18 --i-data=$list_dict_to_string($input_files_idata) | |
19 # end if | |
20 | |
21 --o-merged-data=omergeddata | |
22 | |
23 #if str($examples) != 'None': | |
24 --examples=$examples | |
25 #end if | |
26 | |
27 ; | |
28 cp omergeddata.qza $omergeddata | |
29 | |
30 ]]></command> | |
31 <inputs> | |
32 <repeat name="input_files_idata" optional="False" title="--i-data"> | |
33 <param format="qza,no_unzip.zip" label="--i-data: ARTIFACTS... List[FeatureData[Sequence]] The collection of feature sequences to be merged. [required]" name="additional_input" optional="False" type="data" /> | |
34 </repeat> | |
35 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> | |
36 | |
37 </inputs> | |
38 | |
39 <outputs> | |
40 <data format="qza" label="${tool.name} on ${on_string}: mergeddata.qza" name="omergeddata" /> | |
41 | |
42 </outputs> | |
43 | |
44 <help><![CDATA[ | |
45 Combine collections of feature sequences | |
46 ############################################################### | |
47 | |
48 Combines feature data objects which may or may not contain data for the | |
49 same features. If different feature data is present for the same feature id | |
50 in the inputs, the data from the first will be propagated to the result. | |
51 | |
52 Parameters | |
53 ---------- | |
54 data : List[FeatureData[Sequence]] | |
55 The collection of feature sequences to be merged. | |
56 | |
57 Returns | |
58 ------- | |
59 merged_data : FeatureData[Sequence] | |
60 The resulting collection of feature sequences containing all feature | |
61 sequences provided. | |
62 ]]></help> | |
63 <macros> | |
64 <import>qiime_citation.xml</import> | |
65 </macros> | |
66 <expand macro="qiime_citation"/> | |
67 </tool> |