Mercurial > repos > florianbegusch > qiime2_suite

comparison qiime2-2020.8/qiime_phylogeny_midpoint-root.xml @ 20:d93d8888f0b0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author florianbegusch
date Fri, 04 Sep 2020 12:44:24 +0000
parents
children
comparison
equal deleted inserted replaced
19:6c48f8d82424 20:d93d8888f0b0
1 <?xml version="1.0" ?>
2 <tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root"
3 version="2020.8">
4 <description>Midpoint root an unrooted phylogenetic tree.</description>
5 <requirements>
6 <requirement type="package" version="2020.8">qiime2</requirement>
7 </requirements>
8 <command><![CDATA[
9 qiime phylogeny midpoint-root
10
11 --i-tree=$itree
12
13 --o-rooted-tree=orootedtree
14
15 #if str($examples) != 'None':
16 --examples=$examples
17 #end if
18
19 ;
20 cp orootedtree.qza $orootedtree
21
22 ]]></command>
23 <inputs>
24 <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Unrooted] The phylogenetic tree to be rooted. [required]" name="itree" optional="False" type="data" />
25 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
26
27 </inputs>
28
29 <outputs>
30 <data format="qza" label="${tool.name} on ${on_string}: rootedtree.qza" name="orootedtree" />
31
32 </outputs>
33
34 <help><![CDATA[
35 Midpoint root an unrooted phylogenetic tree.
36 ###############################################################
37
38 Midpoint root an unrooted phylogenetic tree.
39
40 Parameters
41 ----------
42 tree : Phylogeny[Unrooted]
43 The phylogenetic tree to be rooted.
44
45 Returns
46 -------
47 rooted_tree : Phylogeny[Rooted]
48 The rooted phylogenetic tree.
49 ]]></help>
50 <macros>
51 <import>qiime_citation.xml</import>
52 </macros>
53 <expand macro="qiime_citation"/>
54 </tool>