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comparison qiime2/qiime_diversity_alpha-phylogenetic-alt.xml @ 6:de4c22a52df4 draft

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author florianbegusch
date Tue, 13 Aug 2019 07:46:48 -0400
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5:a025a4a89e07 6:de4c22a52df4
1 <?xml version="1.0" ?>
2 <tool id="qiime_diversity_alpha-phylogenetic-alt" name="qiime diversity alpha-phylogenetic-alt" version="2019.7">
3 <description> - Alpha diversity (phylogenetic) - alternative implementation</description>
4 <requirements>
5 <requirement type="package" version="2019.7">qiime2</requirement>
6 </requirements>
7 <command><![CDATA[
8 qiime diversity alpha-phylogenetic-alt
9
10 --i-table=$itable
11 --i-phylogeny=$iphylogeny
12
13 --p-metric=$pmetric
14
15 --o-alpha-diversity=oalphadiversity
16
17 ;
18 cp oalphadiversity.qza $oalphadiversity
19 ]]></command>
20 <inputs>
21 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table containing the samples for which alpha diversity should be computed. [required]" name="itable" optional="False" type="data"/>
22 <param format="qza,no_unzip.zip" label="--i-phylogeny: ARTIFACT Phylogenetic tree containing tip identifiers that Phylogeny[Rooted] correspond to the feature identifiers in the table. This tree can contain tip ids that are not present in the table, but all feature ids in the table must be present in this tree. [required]" name="iphylogeny" optional="False" type="data"/>
23 <param label="--p-metric: " name="pmetric" optional="False" type="select">
24 <option value="faith_pd">faith_pd</option>
25 </param>
26 </inputs>
27 <outputs>
28 <data format="qza" label="${tool.name} on ${on_string}: alphadiversity.qza" name="oalphadiversity"/>
29 </outputs>
30 <help><![CDATA[
31
32 ]]></help>
33 <macros>
34 <import>qiime_citation.xml</import>
35 </macros>
36 <expand macro="qiime_citation"/>
37 </tool>