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comparison qiime2/qiime_taxa_filter-seqs.xml @ 6:de4c22a52df4 draft

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Fixes
author florianbegusch
date Tue, 13 Aug 2019 07:46:48 -0400
parents a025a4a89e07
children f190567fe3f6
comparison
equal deleted inserted replaced
5:a025a4a89e07 6:de4c22a52df4
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2019.4">qiime2</requirement> 5 <requirement type="package" version="2019.4">qiime2</requirement>
6 </requirements> 6 </requirements>
7 <command><![CDATA[ 7 <command><![CDATA[
8 qiime taxa filter-seqs 8 qiime taxa filter-seqs
9
10 --i-sequences=$isequences
11 9
12 10
13 #if str( $id_to_taxonomy_fp.selector ) == 'history' 11 #if str( $id_to_taxonomy_fp.selector ) == 'history'
14 #set $tax = $id_to_taxonomy_fp.taxonomy_fp 12 #set $tax = $id_to_taxonomy_fp.taxonomy_fp
15 --i-taxonomy '$tax' 13 --i-taxonomy '$tax'
16 #else: 14 #else:
17 #set $tax = $id_to_taxonomy_fp.taxonomy_fp.fields.path 15 #set $tax = $id_to_taxonomy_fp.taxonomy_fp.fields.path
18 --i-taxonomy '$tax' 16 --i-taxonomy '$tax'
19 #end if 17 #end if
20 18
19
20 --i-sequences=$isequences
21 21
22 #if str($pinclude): 22 #if str($pinclude):
23 --p-include="$pinclude" 23 --p-include="$pinclude"
24 #end if 24 #end if
25 25