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comparison qiime2/qiime_demux_emp-paired.xml @ 9:f190567fe3f6 draft

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Uploaded
author florianbegusch
date Wed, 14 Aug 2019 15:12:48 -0400
parents 51025741f326
children a0a8d77a991c
comparison
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8:d66c7509e8f9 9:f190567fe3f6
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <tool id="qiime_demux_emp-paired" name="qiime demux emp-paired" version="2019.4"> 2 <tool id="qiime_demux_emp-paired" name="qiime demux emp-paired" version="2019.7">
3 <description> - Demultiplex paired-end sequence data generated with the EMP protocol.</description> 3 <description> - Demultiplex paired-end sequence data generated with the EMP protocol.</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2019.4">qiime2</requirement> 5 <requirement type="package" version="2019.7">qiime2</requirement>
6 </requirements> 6 </requirements>
7 <command><![CDATA[ 7 <command><![CDATA[
8 qiime demux emp-paired 8 qiime demux emp-paired
9 9
10 --i-seqs=$iseqs 10 --i-seqs=$iseqs
13 13
14 #if $input_files_mbarcodesfile: 14 #if $input_files_mbarcodesfile:
15 #def list_dict_to_string(list_dict): 15 #def list_dict_to_string(list_dict):
16 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 16 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
17 #for d in list_dict[1:]: 17 #for d in list_dict[1:]:
18 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name') 18 #set $file_list = $file_list + ' --m-barcodes-file=' + d['additional_input'].__getattr__('file_name')
19 #end for 19 #end for
20 #return $file_list 20 #return $file_list
21 #end def 21 #end def
22 --m-barcodes-file=$list_dict_to_string($input_files_mbarcodesfile) 22 --m-barcodes-file=$list_dict_to_string($input_files_mbarcodesfile)
23 #end if 23 #end if