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comparison qiime2/qiime_diversity_adonis.xml @ 9:f190567fe3f6 draft

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author florianbegusch
date Wed, 14 Aug 2019 15:12:48 -0400
parents de4c22a52df4
children a0a8d77a991c
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8:d66c7509e8f9 9:f190567fe3f6
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <tool id="qiime_diversity_adonis" name="qiime diversity adonis" version="2019.4"> 2 <tool id="qiime_diversity_adonis" name="qiime diversity adonis" version="2019.7">
3 <description> - adonis PERMANOVA test for beta group significance</description> 3 <description> - adonis PERMANOVA test for beta group significance</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2019.4">qiime2</requirement> 5 <requirement type="package" version="2019.7">qiime2</requirement>
6 </requirements> 6 </requirements>
7 <command><![CDATA[ 7 <command><![CDATA[
8 qiime diversity adonis 8 qiime diversity adonis
9 9
10 --i-distance-matrix=$idistancematrix 10 --i-distance-matrix=$idistancematrix
59 <outputs> 59 <outputs>
60 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> 60 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
61 </outputs> 61 </outputs>
62 <help><![CDATA[ 62 <help><![CDATA[
63 adonis PERMANOVA test for beta group significance 63 adonis PERMANOVA test for beta group significance
64 ################################################# 64 ##################################################
65 65
66 Determine whether groups of samples are significantly different from one 66 Determine whether groups of samples are significantly different from one
67 another using the ADONIS permutation-based statistical test in vegan-R. The 67 another using the ADONIS permutation-based statistical test in vegan-R. The
68 function partitions sums of squares of a multivariate data set, and is 68 function partitions sums of squares of a multivariate data set, and is
69 directly analogous to MANOVA (multivariate analysis of variance). This 69 directly analogous to MANOVA (multivariate analysis of variance). This
70 action differs from beta_group_signficance in that it accepts R formulae to 70 action differs from beta_group_significance in that it accepts R formulae
71 perform multi-way ADONIS tests; beta_group_signficance only performs one- 71 to perform multi-way ADONIS tests; beta_group_signficance only performs
72 way tests. For more details see 72 one-way tests. For more details see
73 http://cc.oulu.fi/~jarioksa/softhelp/vegan/html/adonis.html 73 http://cc.oulu.fi/~jarioksa/softhelp/vegan/html/adonis.html
74 74
75 Parameters 75 Parameters
76 ---------- 76 ----------
77 distance_matrix : DistanceMatrix 77 distance_matrix : DistanceMatrix