Mercurial > repos > florianbegusch > qiime2_suite
comparison qiime2/qiime_diversity_adonis.xml @ 9:f190567fe3f6 draft
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author | florianbegusch |
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date | Wed, 14 Aug 2019 15:12:48 -0400 |
parents | de4c22a52df4 |
children | a0a8d77a991c |
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8:d66c7509e8f9 | 9:f190567fe3f6 |
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1 <?xml version="1.0" ?> | 1 <?xml version="1.0" ?> |
2 <tool id="qiime_diversity_adonis" name="qiime diversity adonis" version="2019.4"> | 2 <tool id="qiime_diversity_adonis" name="qiime diversity adonis" version="2019.7"> |
3 <description> - adonis PERMANOVA test for beta group significance</description> | 3 <description> - adonis PERMANOVA test for beta group significance</description> |
4 <requirements> | 4 <requirements> |
5 <requirement type="package" version="2019.4">qiime2</requirement> | 5 <requirement type="package" version="2019.7">qiime2</requirement> |
6 </requirements> | 6 </requirements> |
7 <command><![CDATA[ | 7 <command><![CDATA[ |
8 qiime diversity adonis | 8 qiime diversity adonis |
9 | 9 |
10 --i-distance-matrix=$idistancematrix | 10 --i-distance-matrix=$idistancematrix |
59 <outputs> | 59 <outputs> |
60 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> | 60 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> |
61 </outputs> | 61 </outputs> |
62 <help><![CDATA[ | 62 <help><![CDATA[ |
63 adonis PERMANOVA test for beta group significance | 63 adonis PERMANOVA test for beta group significance |
64 ################################################# | 64 ################################################## |
65 | 65 |
66 Determine whether groups of samples are significantly different from one | 66 Determine whether groups of samples are significantly different from one |
67 another using the ADONIS permutation-based statistical test in vegan-R. The | 67 another using the ADONIS permutation-based statistical test in vegan-R. The |
68 function partitions sums of squares of a multivariate data set, and is | 68 function partitions sums of squares of a multivariate data set, and is |
69 directly analogous to MANOVA (multivariate analysis of variance). This | 69 directly analogous to MANOVA (multivariate analysis of variance). This |
70 action differs from beta_group_signficance in that it accepts R formulae to | 70 action differs from beta_group_significance in that it accepts R formulae |
71 perform multi-way ADONIS tests; beta_group_signficance only performs one- | 71 to perform multi-way ADONIS tests; beta_group_signficance only performs |
72 way tests. For more details see | 72 one-way tests. For more details see |
73 http://cc.oulu.fi/~jarioksa/softhelp/vegan/html/adonis.html | 73 http://cc.oulu.fi/~jarioksa/softhelp/vegan/html/adonis.html |
74 | 74 |
75 Parameters | 75 Parameters |
76 ---------- | 76 ---------- |
77 distance_matrix : DistanceMatrix | 77 distance_matrix : DistanceMatrix |