diff qiime2/qiime_deblur_visualize-stats.xml @ 0:370e0b6e9826 draft

Uploaded
author florianbegusch
date Wed, 17 Jul 2019 03:05:17 -0400
parents
children f190567fe3f6
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/qiime_deblur_visualize-stats.xml	Wed Jul 17 03:05:17 2019 -0400
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+<?xml version="1.0" ?>
+<tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats" version="2019.4">
+	<description> - Visualize Deblur stats per sample.</description>
+	<requirements>
+		<requirement type="package" version="2019.4">qiime2</requirement>
+	</requirements>
+	<command><![CDATA[
+qiime deblur visualize-stats
+
+--i-deblur-stats=$ideblurstats
+
+--o-visualization=ovisualization
+;
+qiime tools export --input-path ovisualization.qzv --output-path out   && mkdir -p '$ovisualization.files_path'
+&& cp -r out/* '$ovisualization.files_path'
+&& mv '$ovisualization.files_path/index.html' '$ovisualization';
+	]]></command>
+	<inputs>
+		<param format="qza,no_unzip.zip" label="--i-deblur-stats: ARTIFACT DeblurStats        Summary statistics of the Deblur process.    [required]" name="ideblurstats" optional="False" type="data"/>
+	</inputs>
+	<outputs>
+		<data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
+	</outputs>
+	<help><![CDATA[
+Visualize Deblur stats per sample.
+##################################
+
+Display Deblur statistics per sample
+
+Parameters
+----------
+deblur_stats : DeblurStats
+    Summary statistics of the Deblur process.
+
+Returns
+-------
+visualization : Visualization
+	]]></help>
+<macros>
+    <import>qiime_citation.xml</import>
+</macros>
+<expand macro="qiime_citation"/>
+</tool>