Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_deblur_visualize-stats.xml @ 0:370e0b6e9826 draft
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author | florianbegusch |
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date | Wed, 17 Jul 2019 03:05:17 -0400 |
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children | f190567fe3f6 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2/qiime_deblur_visualize-stats.xml Wed Jul 17 03:05:17 2019 -0400 @@ -0,0 +1,43 @@ +<?xml version="1.0" ?> +<tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats" version="2019.4"> + <description> - Visualize Deblur stats per sample.</description> + <requirements> + <requirement type="package" version="2019.4">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime deblur visualize-stats + +--i-deblur-stats=$ideblurstats + +--o-visualization=ovisualization +; +qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path' +&& cp -r out/* '$ovisualization.files_path' +&& mv '$ovisualization.files_path/index.html' '$ovisualization'; + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-deblur-stats: ARTIFACT DeblurStats Summary statistics of the Deblur process. [required]" name="ideblurstats" optional="False" type="data"/> + </inputs> + <outputs> + <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> + </outputs> + <help><![CDATA[ +Visualize Deblur stats per sample. +################################## + +Display Deblur statistics per sample + +Parameters +---------- +deblur_stats : DeblurStats + Summary statistics of the Deblur process. + +Returns +------- +visualization : Visualization + ]]></help> +<macros> + <import>qiime_citation.xml</import> +</macros> +<expand macro="qiime_citation"/> +</tool>