Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_diversity_pcoa-biplot.xml @ 0:370e0b6e9826 draft
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author | florianbegusch |
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date | Wed, 17 Jul 2019 03:05:17 -0400 |
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children | f190567fe3f6 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2/qiime_diversity_pcoa-biplot.xml Wed Jul 17 03:05:17 2019 -0400 @@ -0,0 +1,49 @@ +<?xml version="1.0" ?> +<tool id="qiime_diversity_pcoa-biplot" name="qiime diversity pcoa-biplot" version="2019.4"> + <description> - Principal Coordinate Analysis Biplot</description> + <requirements> + <requirement type="package" version="2019.4">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime diversity pcoa-biplot + +--i-pcoa=$ipcoa +--i-features=$ifeatures + +--o-biplot=obiplot +; +cp obiplot.qza $obiplot + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-pcoa: ARTIFACT The PCoA where the features will be projected onto. PCoAResults [required]" name="ipcoa" optional="False" type="data"/> + <param format="qza,no_unzip.zip" label="--i-features: ARTIFACT FeatureTable[RelativeFrequency] Variables to project onto the PCoA matrix [required]" name="ifeatures" optional="False" type="data"/> + </inputs> + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: biplot.qza" name="obiplot"/> + </outputs> + <help><![CDATA[ +Principal Coordinate Analysis Biplot +#################################### + +Project features into a principal coordinates matrix. The features used +should be the features used to compute the distance matrix. It is +recommended that these variables be normalized in cases of dimensionally +heterogeneous physical variables. + +Parameters +---------- +pcoa : PCoAResults + The PCoA where the features will be projected onto. +features : FeatureTable[RelativeFrequency] + Variables to project onto the PCoA matrix + +Returns +------- +biplot : PCoAResults % Properties('biplot') + The resulting PCoA matrix. + ]]></help> +<macros> + <import>qiime_citation.xml</import> +</macros> +<expand macro="qiime_citation"/> +</tool>