Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_feature-table_merge-seqs.xml @ 0:370e0b6e9826 draft
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author | florianbegusch |
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date | Wed, 17 Jul 2019 03:05:17 -0400 |
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children | 51025741f326 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2/qiime_feature-table_merge-seqs.xml Wed Jul 17 03:05:17 2019 -0400 @@ -0,0 +1,56 @@ +<?xml version="1.0" ?> +<tool id="qiime_feature-table_merge-seqs" name="qiime feature-table merge-seqs" version="2019.4"> + <description> - Combine collections of feature sequences</description> + <requirements> + <requirement type="package" version="2019.4">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime feature-table merge-seqs + +#def list_dict_to_string(list_dict): + #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') + #for d in list_dict[1:]: + #set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name') + #end for + #return $file_list +#end def +--i-data=$list_dict_to_string($input_files_idata) + + +--o-merged-data=omergeddata +; +cp omergeddata.qza $omergeddata + ]]></command> + <inputs> + <repeat name="input_files_idata" optional="False" title="--i-data"> + <param format="qza,no_unzip.zip" label="--i-data: PATH List[FeatureData[Sequence]] The collection of feature sequences to be merged. [required]" name="additional_input" type="data"/> + </repeat> + + </inputs> + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: mergeddata.qza" name="omergeddata"/> + </outputs> + <help><![CDATA[ +Combine collections of feature sequences +######################################## + +Combines feature data objects which may or may not contain data for the +same features. If different feature data is present for the same feature id +in the inputs, the data from the first will be propagated to the result. + +Parameters +---------- +data : List[FeatureData[Sequence]] + The collection of feature sequences to be merged. + +Returns +------- +merged_data : FeatureData[Sequence] + The resulting collection of feature sequences containing all feature + sequences provided. + ]]></help> +<macros> + <import>qiime_citation.xml</import> +</macros> +<expand macro="qiime_citation"/> +</tool>