Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_sample-classifier_predict-regression.xml @ 0:370e0b6e9826 draft
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author | florianbegusch |
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date | Wed, 17 Jul 2019 03:05:17 -0400 |
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children | f190567fe3f6 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2/qiime_sample-classifier_predict-regression.xml Wed Jul 17 03:05:17 2019 -0400 @@ -0,0 +1,57 @@ +<?xml version="1.0" ?> +<tool id="qiime_sample-classifier_predict-regression" name="qiime sample-classifier predict-regression" version="2019.4"> + <description> - Use trained regressor to predict target values for new samples.</description> + <requirements> + <requirement type="package" version="2019.4">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime sample-classifier predict-regression + +--i-table=$itable +--i-sample-estimator=$isampleestimator + +#set $pnjobs = '${GALAXY_SLOTS:-4}' + +#if str($pnjobs): + --p-n-jobs="$pnjobs" +#end if + +--o-predictions=opredictions +; +cp opredictions.qza $opredictions + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] Feature table containing all features that should be used for target prediction. [required]" name="itable" optional="False" type="data"/> + <param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Regressor] Sample regressor trained with fit_regressor. [required]" name="isampleestimator" optional="False" type="data"/> + </inputs> + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: predictions.qza" name="opredictions"/> + </outputs> + <help><![CDATA[ +Use trained regressor to predict target values for new samples. +############################################################### + +Use trained estimator to predict target values for new samples. These will +typically be unseen samples, e.g., test data (derived manually or from +split_table) or samples with unknown values, but can theoretically be any +samples present in a feature table that contain overlapping features with +the feature table used to train the estimator. + +Parameters +---------- +table : FeatureTable[Frequency] + Feature table containing all features that should be used for target + prediction. +sample_estimator : SampleEstimator[Regressor] + Sample regressor trained with fit_regressor. + +Returns +------- +predictions : SampleData[RegressorPredictions] + Predicted target values for each input sample. + ]]></help> +<macros> + <import>qiime_citation.xml</import> +</macros> +<expand macro="qiime_citation"/> +</tool>