Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_feature-classifier_fit-classifier-sklearn.xml @ 29:3ba9833030c1 draft
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author | florianbegusch |
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date | Fri, 04 Sep 2020 13:12:49 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2/qiime_feature-classifier_fit-classifier-sklearn.xml Fri Sep 04 13:12:49 2020 +0000 @@ -0,0 +1,66 @@ +<?xml version="1.0" ?> +<tool id="qiime_feature-classifier_fit-classifier-sklearn" name="qiime feature-classifier fit-classifier-sklearn" + version="2020.8"> + <description>Train an almost arbitrary scikit-learn classifier</description> + <requirements> + <requirement type="package" version="2020.8">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime feature-classifier fit-classifier-sklearn + +--i-reference-reads=$ireferencereads + +--i-reference-taxonomy=$ireferencetaxonomy + +#if str($iclassweight) != 'None': +--i-class-weight=$iclassweight +#end if + +--p-classifier-specification=$pclassifierspecification + +--o-classifier=oclassifier + +#if str($examples) != 'None': +--examples=$examples +#end if + +; +cp oclassifier.qza $oclassifier + + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-reference-reads: ARTIFACT FeatureData[Sequence] [required]" name="ireferencereads" optional="False" type="data" /> + <param format="qza,no_unzip.zip" label="--i-reference-taxonomy: ARTIFACT FeatureData[Taxonomy] [required]" name="ireferencetaxonomy" optional="False" type="data" /> + <param format="qza,no_unzip.zip" label="--i-class-weight: ARTIFACT FeatureTable[RelativeFrequency] [optional]" name="iclassweight" optional="False" type="data" /> + <param label="--p-classifier-specification: TEXT [required]" name="pclassifierspecification" optional="False" type="text" /> + <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> + + </inputs> + + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: classifier.qza" name="oclassifier" /> + + </outputs> + + <help><![CDATA[ +Train an almost arbitrary scikit-learn classifier +############################################################### + +Train a scikit-learn classifier to classify reads. + +Parameters +---------- +reference_reads : FeatureData[Sequence] +reference_taxonomy : FeatureData[Taxonomy] +classifier_specification : Str +class_weight : FeatureTable[RelativeFrequency], optional + +Returns +------- +classifier : TaxonomicClassifier + ]]></help> + <macros> + <import>qiime_citation.xml</import> + </macros> + <expand macro="qiime_citation"/> +</tool> \ No newline at end of file