--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/qiime_feature-table_summarize.xml	Fri Sep 04 13:12:49 2020 +0000
@@ -0,0 +1,74 @@
+<?xml version="1.0" ?>
+<tool id="qiime_feature-table_summarize" name="qiime feature-table summarize"
+      version="2020.8">
+  <description>Summarize table</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
+qiime feature-table summarize
+
+--i-table=$itable
+# if $input_files_msamplemetadatafile:
+  # def list_dict_to_string(list_dict):
+    # set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
+    # for d in list_dict[1:]:
+      # set $file_list = $file_list + ' --m-sample-metadata-file=' + d['additional_input'].__getattr__('file_name')
+    # end for
+    # return $file_list
+  # end def
+--m-sample-metadata-file=$list_dict_to_string($input_files_msamplemetadatafile)
+# end if
+
+--o-visualization=ovisualization
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
+;
+cp osampledtable.qza $osampledtable
+
+;
+qiime tools export  ovisualization.qzv --output-path out
+&& mkdir -p '$ovisualization.files_path'
+&& cp -r out/* '$ovisualization.files_path'
+&& mv '$ovisualization.files_path/index.html' '$ovisualization'
+
+  ]]></command>
+  <inputs>
+    <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]   The feature table to be summarized.          [required]" name="itable" optional="False" type="data" />
+    <repeat name="input_files_msamplemetadatafile" optional="True" title="--m-sample-metadata-file">
+      <param format="tabular,qza,no_unzip.zip" label="--m-sample-metadata-file: METADATA... (multiple          The sample metadata. arguments will be merged)                                                     [optional]" name="additional_input" optional="True" type="data" />
+    </repeat>
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
+    
+  </outputs>
+
+  <help><![CDATA[
+Summarize table
+###############################################################
+
+Generate visual and tabular summaries of a feature table.
+
+Parameters
+----------
+table : FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]
+    The feature table to be summarized.
+sample_metadata : Metadata, optional
+    The sample metadata.
+
+Returns
+-------
+visualization : Visualization
+  ]]></help>
+  <macros>
+    <import>qiime_citation.xml</import>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
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