--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/qiime_quality-control_bowtie2-build.xml	Fri Sep 04 13:12:49 2020 +0000
@@ -0,0 +1,58 @@
+<?xml version="1.0" ?>
+<tool id="qiime_quality-control_bowtie2-build" name="qiime quality-control bowtie2-build"
+      version="2020.8">
+  <description>Build bowtie2 index from reference sequences.</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
+qiime quality-control bowtie2-build
+
+--i-sequences=$isequences
+
+--p-n-threads=$pnthreads
+
+--o-database=odatabase
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
+;
+cp odatabase.qza $odatabase
+
+  ]]></command>
+  <inputs>
+    <param format="qza,no_unzip.zip" label="--i-sequences: ARTIFACT FeatureData[Sequence] Reference sequences used to build bowtie2 index. [required]" name="isequences" optional="False" type="data" />
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="qza" label="${tool.name} on ${on_string}: database.qza" name="odatabase" />
+    
+  </outputs>
+
+  <help><![CDATA[
+Build bowtie2 index from reference sequences.
+###############################################################
+
+Build bowtie2 index from reference sequences.
+
+Parameters
+----------
+sequences : FeatureData[Sequence]
+    Reference sequences used to build bowtie2 index.
+n_threads : Int % Range(1, None), optional
+    Number of threads to launch
+
+Returns
+-------
+database : Bowtie2Index
+    Bowtie2 index.
+  ]]></help>
+  <macros>
+    <import>qiime_citation.xml</import>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
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