Mercurial > repos > florianbegusch > qiime2_suite

diff qiime2/merge_feature_table_and_taxonomy.xml @ 4:914fa4daf16a draft

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Fixes
author florianbegusch
date Wed, 31 Jul 2019 03:06:00 -0400
parents 370e0b6e9826
children f190567fe3f6
line wrap: on
line diff
--- a/qiime2/merge_feature_table_and_taxonomy.xml	Sun Jul 21 02:21:34 2019 -0400
+++ b/qiime2/merge_feature_table_and_taxonomy.xml	Wed Jul 31 03:06:00 2019 -0400
@@ -7,8 +7,8 @@
 	<command>
 mkdir out;
 
-qiime tools export --input-path --output-path out $taxonomy_qza;
-qiime tools export --input-path --output-path out $biom_qza;
+qiime tools export --input-path $taxonomy_qza --output-path out;
+qiime tools export --input-path $biom_qza --output-path out;
 
 sed -i '1s;^;#;' out/*.tsv;
 sed -i 's/Confidence/confidence/g' out/*.tsv;