Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_diversity_beta-rarefaction.xml @ 4:914fa4daf16a draft
Fixes
author | florianbegusch |
---|---|
date | Wed, 31 Jul 2019 03:06:00 -0400 |
parents | 51025741f326 |
children | de4c22a52df4 |
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--- a/qiime2/qiime_diversity_beta-rarefaction.xml Sun Jul 21 02:21:34 2019 -0400 +++ b/qiime2/qiime_diversity_beta-rarefaction.xml Wed Jul 31 03:06:00 2019 -0400 @@ -32,7 +32,7 @@ #def list_dict_to_string(list_dict): #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') #for d in list_dict[1:]: - #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name') + #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name') #end for #return $file_list #end def @@ -41,7 +41,6 @@ --o-visualization=ovisualization ; -cp mmetadatafile.qza $mmetadatafile; qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path' && cp -r out/* '$ovisualization.files_path' && mv '$ovisualization.files_path/index.html' '$ovisualization'; @@ -109,7 +108,7 @@ <option value="RdYlGn_r">RdYlGn_r</option> </param> - <repeat name="input_files_mmetadatafile" optional="False" title="--m-metadata-file"> + <repeat name="input_files_mmetadatafile" optional="False" title="--m-metadata-file [required]"> <param label="--m-metadata-file: METADATA... (multiple arguments will be merged) The sample metadata used for the Emperor jackknifed PCoA plot. [required]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> </repeat>