diff qiime2/qiime_diversity_beta-rarefaction.xml @ 4:914fa4daf16a draft

Fixes
author florianbegusch
date Wed, 31 Jul 2019 03:06:00 -0400
parents 51025741f326
children de4c22a52df4
line wrap: on
line diff
--- a/qiime2/qiime_diversity_beta-rarefaction.xml	Sun Jul 21 02:21:34 2019 -0400
+++ b/qiime2/qiime_diversity_beta-rarefaction.xml	Wed Jul 31 03:06:00 2019 -0400
@@ -32,7 +32,7 @@
 #def list_dict_to_string(list_dict):
 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
 #for d in list_dict[1:]:
-	#set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name')
+	#set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
 #end for
 #return $file_list
 #end def
@@ -41,7 +41,6 @@
 
 --o-visualization=ovisualization
 ;
-cp mmetadatafile.qza $mmetadatafile;
 qiime tools export --input-path ovisualization.qzv --output-path out   && mkdir -p '$ovisualization.files_path'
 && cp -r out/* '$ovisualization.files_path'
 && mv '$ovisualization.files_path/index.html' '$ovisualization';
@@ -109,7 +108,7 @@
 			<option value="RdYlGn_r">RdYlGn_r</option>
 		</param>
 
-		<repeat name="input_files_mmetadatafile" optional="False" title="--m-metadata-file">
+		<repeat name="input_files_mmetadatafile" optional="False" title="--m-metadata-file  [required]">
 			<param label="--m-metadata-file: METADATA... (multiple arguments will be merged) The sample metadata used for the Emperor jackknifed PCoA plot. [required]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" />
 		</repeat>