Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_feature-classifier_classify-consensus-vsearch.xml @ 4:914fa4daf16a draft
Fixes
author | florianbegusch |
---|---|
date | Wed, 31 Jul 2019 03:06:00 -0400 |
parents | 370e0b6e9826 |
children | de4c22a52df4 |
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--- a/qiime2/qiime_feature-classifier_classify-consensus-vsearch.xml Sun Jul 21 02:21:34 2019 -0400 +++ b/qiime2/qiime_feature-classifier_classify-consensus-vsearch.xml Wed Jul 31 03:06:00 2019 -0400 @@ -20,6 +20,7 @@ #end if + #if $pmaxaccepts: --p-maxaccepts=$pmaxaccepts #end if @@ -40,10 +41,22 @@ --p-min-consensus=$pminconsensus #end if + + + + +#if '__sq__' in str($punassignablelabel): + #set $punassignablelabel_temp = $punassignablelabel.replace('__sq__', "'") + #set $punassignablelabel = $punassignablelabel_temp +#end if + #if str($punassignablelabel): --p-unassignable-label="$punassignablelabel" #end if + + + #set $pthreads = '${GALAXY_SLOTS:-4}' #if str($pthreads): --p-threads="$pthreads" @@ -81,7 +94,7 @@ <option value="plus">plus</option> </param> <param label="--p-min-consensus: NUMBER Range(0.5, 1.0, inclusive_start=False, inclusive_end=True) Minimum fraction of assignments must match top hit to be accepted as consensus assignment. Must be in range (0.5, 1.0]. [default: 0.51]" name="pminconsensus" optional="True" type="float" min="0.5" max="1" exclude_min="True" exclude_max="False" value="0.51"/> - <param label="--p-unassignable-label: TEXT [default: 'Unassigned']" name="punassignablelabel" optional="True" type="text" value="'Unassigned'"/> + <param label="--p-unassignable-label: TEXT [default: 'Unassigned']" name="punassignablelabel" optional="True" type="text" value="Unassigned"/> </inputs> <outputs> <data format="qza" label="${tool.name} on ${on_string}: classification.qza" name="oclassification"/>