Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_longitudinal_nmit.xml @ 4:914fa4daf16a draft
Fixes
author | florianbegusch |
---|---|
date | Wed, 31 Jul 2019 03:06:00 -0400 |
parents | 370e0b6e9826 |
children | f190567fe3f6 |
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--- a/qiime2/qiime_longitudinal_nmit.xml Sun Jul 21 02:21:34 2019 -0400 +++ b/qiime2/qiime_longitudinal_nmit.xml Wed Jul 31 03:06:00 2019 -0400 @@ -8,7 +8,21 @@ qiime longitudinal nmit --i-table=$itable ---p-individual-id-column="$pindividualidcolumn" + + + + +#if '__sq__' in str($pindividualidcolumn): + #set $pindividualidcolumn_temp = $pindividualidcolumn.replace('__sq__', "'") + #set $pindividualidcolumn = $pindividualidcolumn_temp +#end if + +#if str($pindividualidcolumn): + --p-individual-id-column="$pindividualidcolumn" +#end if + + + #if str($pcorrmethod) != 'None': --p-corr-method=$pcorrmethod @@ -50,7 +64,7 @@ <option value="nuc">nuc</option> </param> - <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file"> + <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file [required]"> <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> </repeat>