Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_phylogeny_iqtree-ultrafast-bootstrap.xml @ 4:914fa4daf16a draft
Fixes
author | florianbegusch |
---|---|
date | Wed, 31 Jul 2019 03:06:00 -0400 |
parents | 370e0b6e9826 |
children | de4c22a52df4 |
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--- a/qiime2/qiime_phylogeny_iqtree-ultrafast-bootstrap.xml Sun Jul 21 02:21:34 2019 -0400 +++ b/qiime2/qiime_phylogeny_iqtree-ultrafast-bootstrap.xml Wed Jul 31 03:06:00 2019 -0400 @@ -13,10 +13,13 @@ --p-seed="$pseed" #end if -#if $pncores: - --p-n-cores=$pncores + +#set $pncores = '${GALAXY_SLOTS:-4}' +#if str($pncores): +--p-n-cores=$pncores #end if + #if $pnruns: --p-n-runs=$pnruns #end if @@ -100,7 +103,6 @@ <inputs> <param format="qza,no_unzip.zip" label="--i-alignment: ARTIFACT FeatureData[AlignedSequence] Aligned sequences to be used for phylogenetic reconstruction. [required]" name="ialignment" optional="False" type="data"/> <param label="--p-seed: INTEGER Random number seed. If not set, program defaults will be used. See IQ-TREE manual for details. [optional]" name="pseed" optional="True" type="integer"/> - <param label="--p-n-cores: INTEGER The number of cores to use for parallel processing. Range(0, None) Use '0' to let IQ-TREE automatically determine the optimal number of cores to use. [default: 1]" name="pncores" optional="True" type="integer" min="0" value="1"/> <param label="--p-n-runs: INTEGER Number of indepedent runs. Multiple independent Range(1, None) runs (e.g. 10) can outperform a single run in terms of likelihood maximisation. [default: 1]" name="pnruns" optional="True" type="integer" min="1" value="1"/> <param label="--p-substitution-model: " name="psubstitutionmodel" optional="True" type="select"> <option selected="True" value="None">Selection is Optional</option>