Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_feature-table_presence-absence.xml @ 14:a0a8d77a991c draft
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author | florianbegusch |
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date | Thu, 03 Sep 2020 09:51:29 +0000 |
parents | f190567fe3f6 |
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--- a/qiime2/qiime_feature-table_presence-absence.xml Thu Sep 03 09:46:00 2020 +0000 +++ b/qiime2/qiime_feature-table_presence-absence.xml Thu Sep 03 09:51:29 2020 +0000 @@ -1,27 +1,43 @@ <?xml version="1.0" ?> -<tool id="qiime_feature-table_presence-absence" name="qiime feature-table presence-absence" version="2019.7"> - <description> - Convert to presence/absence</description> - <requirements> - <requirement type="package" version="2019.7">qiime2</requirement> - </requirements> - <command><![CDATA[ +<tool id="qiime_feature-table_presence-absence" name="qiime feature-table presence-absence" + version="2020.8"> + <description>Convert to presence/absence</description> + <requirements> + <requirement type="package" version="2020.8">qiime2</requirement> + </requirements> + <command><![CDATA[ qiime feature-table presence-absence ---i-table=$itable +#if $itable: + --i-table +#end if ---o-presence-absence-table=opresenceabsencetable +#if $opresenceabsencetable: + --o-presence-absence-table +#end if + +#if str($examples) != 'None': +--examples=$examples +#end if + ; -cp opresenceabsencetable.qza $opresenceabsencetable - ]]></command> - <inputs> - <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table to be converted into presence/absence abundances. [required]" name="itable" optional="False" type="data"/> - </inputs> - <outputs> - <data format="qza" label="${tool.name} on ${on_string}: presenceabsencetable.qza" name="opresenceabsencetable"/> - </outputs> - <help><![CDATA[ +cp omergeddata.qza $omergeddata + + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-table: --i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table to be converted into presence/absence abundances. [required]" name="itable" selected="False" type="boolean" /> + <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> + + </inputs> + + <outputs> + <param label="--o-presence-absence-table: --o-presence-absence-table: ARTIFACT FeatureTable[PresenceAbsence] The resulting presence/absence feature table. [required]" name="opresenceabsencetable" selected="False" type="boolean" /> + + </outputs> + + <help><![CDATA[ Convert to presence/absence -########################### +############################################################### Convert frequencies to binary values indicating presence or absence of a feature in a sample. @@ -35,9 +51,9 @@ ------- presence_absence_table : FeatureTable[PresenceAbsence] The resulting presence/absence feature table. - ]]></help> -<macros> + ]]></help> + <macros> <import>qiime_citation.xml</import> -</macros> -<expand macro="qiime_citation"/> -</tool> + </macros> + <expand macro="qiime_citation"/> +</tool> \ No newline at end of file