Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_feature-table_subsample.xml @ 14:a0a8d77a991c draft
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author | florianbegusch |
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date | Thu, 03 Sep 2020 09:51:29 +0000 |
parents | f190567fe3f6 |
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--- a/qiime2/qiime_feature-table_subsample.xml Thu Sep 03 09:46:00 2020 +0000 +++ b/qiime2/qiime_feature-table_subsample.xml Thu Sep 03 09:51:29 2020 +0000 @@ -1,38 +1,48 @@ <?xml version="1.0" ?> -<tool id="qiime_feature-table_subsample" name="qiime feature-table subsample" version="2019.7"> - <description> - Subsample table</description> - <requirements> - <requirement type="package" version="2019.7">qiime2</requirement> - </requirements> - <command><![CDATA[ +<tool id="qiime_feature-table_subsample" name="qiime feature-table subsample" + version="2020.8"> + <description>Subsample table</description> + <requirements> + <requirement type="package" version="2020.8">qiime2</requirement> + </requirements> + <command><![CDATA[ qiime feature-table subsample --i-table=$itable -#if str($psubsamplingdepth): - --p-subsampling-depth="$psubsamplingdepth" -#end if +--p-subsampling-depth=$psubsamplingdepth --p-axis=$paxis --o-sampled-table=osampledtable + +#if str($examples) != 'None': +--examples=$examples +#end if + ; cp osampledtable.qza $osampledtable - ]]></command> - <inputs> - <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to be sampled. [required]" name="itable" optional="False" type="data"/> - <param label="--p-subsampling-depth: INTEGER Range(1, None) The total number of samples or features to be randomly sampled. Samples or features that are reduced to a zero sum will not be included in the resulting table. [required]" name="psubsamplingdepth" optional="False" min="1" value="" type="integer"/> - <param label="--p-axis: " name="paxis" optional="False" type="select"> - <option value="sample">sample</option> - <option value="feature">feature</option> - </param> - </inputs> - <outputs> - <data format="qza" label="${tool.name} on ${on_string}: sampledtable.qza" name="osampledtable"/> - </outputs> - <help><![CDATA[ + + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to be sampled. [required]" name="itable" optional="False" type="data" /> + <param label="--p-subsampling-depth: INTEGER Range(1, None) The total number of samples or features to be randomly sampled. Samples or features that are reduced to a zero sum will not be included in the resulting table. [required]" name="psubsamplingdepth" optional="False" type="text" /> + <param label="--p-axis: " name="paxis" optional="False" type="select"> + <option value="sample">sample</option> + <option value="feature">feature</option> + </param> + <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> + + </inputs> + + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: sampledtable.qza" name="osampledtable" /> + + </outputs> + + <help><![CDATA[ Subsample table -############### +############################################################### Randomly pick samples or features, without replacement, from the table. @@ -53,9 +63,9 @@ ------- sampled_table : FeatureTable[Frequency] The resulting subsampled feature table. - ]]></help> -<macros> + ]]></help> + <macros> <import>qiime_citation.xml</import> -</macros> -<expand macro="qiime_citation"/> -</tool> + </macros> + <expand macro="qiime_citation"/> +</tool> \ No newline at end of file