Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_phylogeny_midpoint-root.xml @ 14:a0a8d77a991c draft
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author | florianbegusch |
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date | Thu, 03 Sep 2020 09:51:29 +0000 |
parents | f190567fe3f6 |
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--- a/qiime2/qiime_phylogeny_midpoint-root.xml Thu Sep 03 09:46:00 2020 +0000 +++ b/qiime2/qiime_phylogeny_midpoint-root.xml Thu Sep 03 09:51:29 2020 +0000 @@ -1,27 +1,39 @@ <?xml version="1.0" ?> -<tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root" version="2019.7"> - <description> - Midpoint root an unrooted phylogenetic tree.</description> - <requirements> - <requirement type="package" version="2019.7">qiime2</requirement> - </requirements> - <command><![CDATA[ +<tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root" + version="2020.8"> + <description>Midpoint root an unrooted phylogenetic tree.</description> + <requirements> + <requirement type="package" version="2020.8">qiime2</requirement> + </requirements> + <command><![CDATA[ qiime phylogeny midpoint-root --i-tree=$itree --o-rooted-tree=orootedtree + +#if str($examples) != 'None': +--examples=$examples +#end if + ; cp orootedtree.qza $orootedtree - ]]></command> - <inputs> - <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Unrooted] The phylogenetic tree to be rooted. [required]" name="itree" optional="False" type="data"/> - </inputs> - <outputs> - <data format="qza" label="${tool.name} on ${on_string}: rootedtree.qza" name="orootedtree"/> - </outputs> - <help><![CDATA[ + + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Unrooted] The phylogenetic tree to be rooted. [required]" name="itree" optional="False" type="data" /> + <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> + + </inputs> + + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: rootedtree.qza" name="orootedtree" /> + + </outputs> + + <help><![CDATA[ Midpoint root an unrooted phylogenetic tree. -############################################ +############################################################### Midpoint root an unrooted phylogenetic tree. @@ -34,9 +46,9 @@ ------- rooted_tree : Phylogeny[Rooted] The rooted phylogenetic tree. - ]]></help> -<macros> + ]]></help> + <macros> <import>qiime_citation.xml</import> -</macros> -<expand macro="qiime_citation"/> -</tool> + </macros> + <expand macro="qiime_citation"/> +</tool> \ No newline at end of file