diff qiime2-2020.8/qiime_diversity_pcoa-biplot.xml @ 20:d93d8888f0b0 draft

Uploaded
author florianbegusch
date Fri, 04 Sep 2020 12:44:24 +0000
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+++ b/qiime2-2020.8/qiime_diversity_pcoa-biplot.xml	Fri Sep 04 12:44:24 2020 +0000
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+<?xml version="1.0" ?>
+<tool id="qiime_diversity_pcoa-biplot" name="qiime diversity pcoa-biplot"
+      version="2020.8">
+  <description>Principal Coordinate Analysis Biplot</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
+qiime diversity pcoa-biplot
+
+--i-pcoa=$ipcoa
+
+--i-features=$ifeatures
+
+--o-biplot=obiplot
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
+;
+cp obiplot.qza $obiplot
+
+  ]]></command>
+  <inputs>
+    <param format="qza,no_unzip.zip" label="--i-pcoa: ARTIFACT      The PCoA where the features will be projected onto. PCoAResults                                                     [required]" name="ipcoa" optional="False" type="data" />
+    <param format="qza,no_unzip.zip" label="--i-features: ARTIFACT FeatureTable[RelativeFrequency] Variables to project onto the PCoA matrix  [required]" name="ifeatures" optional="False" type="data" />
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="qza" label="${tool.name} on ${on_string}: biplot.qza" name="obiplot" />
+    
+  </outputs>
+
+  <help><![CDATA[
+Principal Coordinate Analysis Biplot
+###############################################################
+
+Project features into a principal coordinates matrix. The features used
+should be the features used to compute the distance matrix. It is
+recommended that these variables be normalized in cases of dimensionally
+heterogeneous physical variables.
+
+Parameters
+----------
+pcoa : PCoAResults
+    The PCoA where the features will be projected onto.
+features : FeatureTable[RelativeFrequency]
+    Variables to project onto the PCoA matrix
+
+Returns
+-------
+biplot : PCoAResults % Properties('biplot')
+    The resulting PCoA matrix.
+  ]]></help>
+  <macros>
+    <import>qiime_citation.xml</import>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
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