Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2-2020.8/qiime_feature-table_merge-taxa.xml @ 20:d93d8888f0b0 draft
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author | florianbegusch |
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date | Fri, 04 Sep 2020 12:44:24 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2-2020.8/qiime_feature-table_merge-taxa.xml Fri Sep 04 12:44:24 2020 +0000 @@ -0,0 +1,68 @@ +<?xml version="1.0" ?> +<tool id="qiime_feature-table_merge-taxa" name="qiime feature-table merge-taxa" + version="2020.8"> + <description>Combine collections of feature taxonomies</description> + <requirements> + <requirement type="package" version="2020.8">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime feature-table merge-taxa +# if $input_files_idata: + # def list_dict_to_string(list_dict): + # set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') + # for d in list_dict[1:]: + # set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name') + # end for + # return $file_list + # end def +--i-data=$list_dict_to_string($input_files_idata) +# end if + +--o-merged-data=omergeddata + +#if str($examples) != 'None': +--examples=$examples +#end if + +; +cp omergeddata.qza $omergeddata + + ]]></command> + <inputs> + <repeat name="input_files_idata" optional="False" title="--i-data"> + <param format="qza,no_unzip.zip" label="--i-data: ARTIFACTS... List[FeatureData[Taxonomy]] The collection of feature taxonomies to be merged. [required]" name="additional_input" optional="False" type="data" /> + </repeat> + <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> + + </inputs> + + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: mergeddata.qza" name="omergeddata" /> + + </outputs> + + <help><![CDATA[ +Combine collections of feature taxonomies +############################################################### + +Combines a pair of feature data objects which may or may not contain data +for the same features. If different feature data is present for the same +feature id in the inputs, the data from the first will be propagated to the +result. + +Parameters +---------- +data : List[FeatureData[Taxonomy]] + The collection of feature taxonomies to be merged. + +Returns +------- +merged_data : FeatureData[Taxonomy] + The resulting collection of feature taxonomies containing all feature + taxonomies provided. + ]]></help> + <macros> + <import>qiime_citation.xml</import> + </macros> + <expand macro="qiime_citation"/> +</tool> \ No newline at end of file