--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/qiime_demux_filter-samples.xml	Tue Aug 13 07:46:48 2019 -0400
@@ -0,0 +1,71 @@
+<?xml version="1.0" ?>
+<tool id="qiime_demux_filter-samples" name="qiime demux filter-samples" version="2019.7">
+	<description> - Filter samples out of demultiplexed data.</description>
+	<requirements>
+		<requirement type="package" version="2019.7">qiime2</requirement>
+	</requirements>
+	<command><![CDATA[
+qiime demux filter-samples 
+    
+--i-demux=$idemux
+
+
+#if $input_files_mmetadatafile:
+#def list_dict_to_string(list_dict):
+  #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
+  #for d in list_dict[1:]:
+	  #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
+  #end for
+  #return $file_list
+#end def
+  --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
+#end if
+
+
+
+#if '__sq__' in str($pwhere):
+  #set $pwhere_temp = $pwhere.replace('__sq__', "'")
+  #set $pwhere = $pwhere_temp
+#end if
+
+
+#if str($pwhere):
+ --p-where="$pwhere"
+#end if
+
+
+#if $pexcludeids:
+ --p-exclude-ids
+#end if
+
+#if str($citations) != 'None':
+ --citations=$citations
+#end if
+
+
+--o-filtered-demux=ofiltereddemux
+
+;
+cp ofiltereddemux.qza $ofiltereddemux
+	]]></command>
+	<inputs>
+
+		<repeat name="input_files_mmetadatafile" optional="False" title="--m-metadata-file">
+			<param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. Sample metadata file containing individual_id_column.  [required]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" />
+		</repeat>
+
+		<param format="qza,no_unzip.zip" label="--i-demux: ARTIFACT SampleData[SequencesWithQuality¹ | PairedEndSequencesWithQuality² | JoinedSequencesWithQuality³] The demultiplexed data from which samples should be filtered.                                    [required]" name="idemux" optional="False" type="data"/>
+		<param label="--p-where: TEXT       Optional SQLite WHERE clause specifying sample metadata criteria that must be met to be included in the filtered data. If not provided, all samples in `metadata` that are also in the demultiplexed data will be retained.                                 [optional]" name="pwhere" optional="True" type="text"/>
+		<param label="--p-exclude-ids: --p-no-exclude-ids Defaults to False. If True, the samples selected by the `metadata` and optional `where` parameter will be excluded from the filtered data.       [default: False]" name="pexcludeids" selected="False" type="boolean"/>
+	</inputs>
+	<outputs>
+		<data format="qza" label="${tool.name} on ${on_string}: filtereddemux.qza" name="ofiltereddemux"/>
+	</outputs>
+	<help><![CDATA[
+
+	]]></help>
+<macros>
+    <import>qiime_citation.xml</import>
+</macros>
+<expand macro="qiime_citation"/>
+</tool>