Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_diversity_beta-correlation.xml @ 6:de4c22a52df4 draft
Fixes
author | florianbegusch |
---|---|
date | Tue, 13 Aug 2019 07:46:48 -0400 |
parents | 914fa4daf16a |
children | f190567fe3f6 |
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--- a/qiime2/qiime_diversity_beta-correlation.xml Mon Aug 05 01:29:30 2019 -0400 +++ b/qiime2/qiime_diversity_beta-correlation.xml Tue Aug 13 07:46:48 2019 -0400 @@ -24,11 +24,11 @@ --p-method=$pmethod #end if -#if $ppermutations: +#if str($ppermutations): --p-permutations=$ppermutations #end if -#if $pintersectids: +#if str($pintersectids): --p-intersect-ids #end if @@ -57,17 +57,13 @@ -#if $input_files_mmetadatafile: -#def list_dict_to_string(list_dict): -#set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') -#for d in list_dict[1:]: - #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name') -#end for -#return $file_list -#end def ---m-metadata-file=$list_dict_to_string($input_files_mmetadatafile) +#if $metadatafile: + --m-metadata-file=$metadatafile #end if + + + --o-metadata-distance-matrix=ometadatadistancematrix --o-mantel-scatter-visualization=omantelscattervisualization ; @@ -88,9 +84,9 @@ <param label="--p-intersect-ids: --p-no-intersect-ids If supplied, IDs that are not found in both distance matrices will be discarded before applying the Mantel test. Default behavior is to error on any mismatched IDs. [default: False]" name="pintersectids" selected="False" type="boolean"/> <param label="--p-label1: TEXT Label for `distance-matrix` in the output visualization. [default: 'Metadata']" name="plabel1" optional="True" type="text" value="Metadata"/> <param label="--p-label2: TEXT Label for `metadata-distance-matrix` in the output visualization. [default: 'Distance Matrix']" name="plabel2" optional="True" type="text" value="Distance Matrix"/> - <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file [required]"> - <param label="--m-metadata-file" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> - </repeat> + + <param label="--m-metadata-file METADATA" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" optional="True" /> + </inputs> <outputs> <data format="qza" label="${tool.name} on ${on_string}: metadatadistancematrix.qza" name="ometadatadistancematrix"/>