diff qiime2/qiime_longitudinal_first-differences.xml @ 6:de4c22a52df4 draft

Fixes
author florianbegusch
date Tue, 13 Aug 2019 07:46:48 -0400
parents 914fa4daf16a
children f190567fe3f6
line wrap: on
line diff
--- a/qiime2/qiime_longitudinal_first-differences.xml	Mon Aug 05 01:29:30 2019 -0400
+++ b/qiime2/qiime_longitudinal_first-differences.xml	Tue Aug 13 07:46:48 2019 -0400
@@ -8,8 +8,17 @@
 qiime longitudinal first-differences
 
 --p-state-column="$pstatecolumn"
+--p-metric="$pmetric"
+
+
+
+#if '__pd__' in str($pindividualidcolumn):
+	#set $pwhere_temp = $pindividualidcolumn.replace('__pd__', "#")
+	#set $pindividualidcolumn = $pwhere_temp
+#end if
 --p-individual-id-column="$pindividualidcolumn"
---p-metric="$pmetric"
+
+
 
 #if str($itable) != 'None':
  --i-table=$itable
@@ -53,7 +62,7 @@
 		</param>
 		<param label="--p-baseline: NUMBER    A value listed in the state-column metadata column against which all other states should be compared. Toggles calculation of static differences instead of first differences (which are calculated if no value is given for baseline). If a 'baseline' value is provided, sample differences at each state are compared against the baseline state, instead of the previous state. Must be a value listed in the state-column.                              [optional]" name="pbaseline" optional="True" type="float"/>
 
-		<repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file  [required]">
+		<repeat name="input_files_mmetadatafile" optional="False" title="--m-metadata-file  [required]">
 			<param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" />
 		</repeat>