Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_gneiss_gradient-clustering.xml @ 9:f190567fe3f6 draft
Uploaded
author | florianbegusch |
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date | Wed, 14 Aug 2019 15:12:48 -0400 |
parents | 51025741f326 |
children | a0a8d77a991c |
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--- a/qiime2/qiime_gneiss_gradient-clustering.xml Tue Aug 13 07:57:53 2019 -0400 +++ b/qiime2/qiime_gneiss_gradient-clustering.xml Wed Aug 14 15:12:48 2019 -0400 @@ -1,8 +1,8 @@ <?xml version="1.0" ?> -<tool id="qiime_gneiss_gradient-clustering" name="qiime gneiss gradient-clustering" version="2019.4"> +<tool id="qiime_gneiss_gradient-clustering" name="qiime gneiss gradient-clustering" version="2019.7"> <description> - Hierarchical clustering using gradient information.</description> <requirements> - <requirement type="package" version="2019.4">qiime2</requirement> + <requirement type="package" version="2019.7">qiime2</requirement> </requirements> <command><![CDATA[ qiime gneiss gradient-clustering @@ -11,15 +11,8 @@ --m-gradient-column="$mgradientcolumn" -#if $input_files_mgradientfile: -#def list_dict_to_string(list_dict): - #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') - #for d in list_dict[1:]: - #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name') - #end for - #return $file_list -#end def ---m-gradient-file=$list_dict_to_string($input_files_mgradientfile) +#if $mgradientfile: +--m-gradient-file=$mgradientfile #end if #if $pnoweighted: @@ -35,9 +28,7 @@ <param label="--m-gradient-column: COLUMN MetadataColumn[Numeric] Contains gradient values to sort the features and samples. [required]" name="mgradientcolumn" optional="False" type="text"/> <param label="--p-no-weighted : Specifies if abundance or presence/absence information should be used to perform the clustering. [default: False]" name="pnoweighted" selected="False" type="boolean"/> - <repeat name="input_files_mgradientfile" optional="False" title="--m-gradient-file"> - <param label="--m-gradient-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [required]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> - </repeat> + <param label="--m-gradient-file: " name="mgradientfile" optional="True" type="data" format="tabular,qza,no_unzip.zip" /> </inputs> <outputs>