Mercurial > repos > florianbegusch > qiime2_suite
view qiime2/qiime_gneiss_assign-ids.xml @ 10:21c7954105a9 draft
Fix
author | florianbegusch |
---|---|
date | Sun, 25 Aug 2019 10:26:27 -0400 |
parents | f190567fe3f6 |
children | a0a8d77a991c |
line wrap: on
line source
<?xml version="1.0" ?> <tool id="qiime_gneiss_assign-ids" name="qiime gneiss assign-ids" version="2019.7"> <description> - Assigns ids on internal nodes in the tree, and makes sure that they are consistent with the table columns.</description> <requirements> <requirement type="package" version="2019.7">qiime2</requirement> </requirements> <command><![CDATA[ qiime gneiss assign-ids --i-input-table=$iinputtable --i-input-tree=$iinputtree --o-output-table=ooutputtable --o-output-tree=ooutputtree ; cp ooutputtable.qza $ooutputtable; cp ooutputtree.qza $ooutputtree ]]></command> <inputs> <param format="qza,no_unzip.zip" label="--i-input-table: ARTIFACT FeatureTable[Frequency] The input table of counts. [required]" name="iinputtable" optional="False" type="data"/> <param format="qza,no_unzip.zip" label="--i-input-tree: ARTIFACT Phylogeny[Rooted] The input tree with potential missing ids. [required]" name="iinputtree" optional="False" type="data"/> </inputs> <outputs> <data format="qza" label="${tool.name} on ${on_string}: outputtable.qza" name="ooutputtable"/> <data format="qza" label="${tool.name} on ${on_string}: outputtree.qza" name="ooutputtree"/> </outputs> <help><![CDATA[ Assigns ids on internal nodes in the tree, and makes sure that they are consistent with the table columns. ########################################################################################################## Assigns UUIDs to uniquely identify internal nodes in the tree. Also corrects for polytomies to create strictly bifurcating trees and aligns the table columns with the tree tip names Parameters ---------- input_table : FeatureTable[Frequency] The input table of counts. input_tree : Phylogeny[Rooted] The input tree with potential missing ids. Returns ------- output_table : FeatureTable[Frequency] A table with features matching the tree tips. output_tree : Hierarchy A tree with uniquely identifying ids. ]]></help> <macros> <import>qiime_citation.xml</import> </macros> <expand macro="qiime_citation"/> </tool>